Table 3. Confirmation of selected genes using RT-PCR.
Encoded Protein/Gene | Symbol | Microarray | RT-PCR | ||||
APAP | IFN-β | IFN-β+APAP | APAP | IFN-β | IFN-β+APAP | ||
Heme oxygenase (decycling) 1 | Hmox1 | 2.7 | −1.5 | 2.3 | 9.6 | −3.8 | 12.1 |
Keratin 18 | Krt18 | −1.3 | 1.1 | −2.0 | −1.7 | 1.1 | −2.0 |
B-cell linker | Blnk | −1.0 | 2.6 | 1.2 | −2.3 | 10.1 | 6.1 |
2′–5′ Oligoadenylate synthetase 2 | Oas2 | 1.0 | 1.8 | 1.3 | −1.3 | 26.8 | 13.0 |
Interleukin-1 receptor-associated kinase 2 | Irak2 | −1.1 | −1.0 | −1.6 | −1.5 | −2.8 | −4.0 |
EG634650 | EG | −1.2 | 6.5 | 4.1 | −3.6 | 95.3 | 24.7 |
Interferon-induced protein with tetratricopeptide repeats 3 | Ifit3 | −1.1 | 49.6 | 29.9 | −3.1 | 376.9 | 109.2 |
Interferon Stimulated Gene 15 ubiquitin-like modifier | Isg15 | −1.3 | 20.0 | 12.3 | −1.2 | 245.1 | 96.1 |
2′–5′ Oligoadenylate synthetase-like 1 | Oasl1 | −1.2 | 13.3 | 7.3 | −1.8 | 298.0 | 80.6 |
Z-DNA binding protein 1 | Zbp1 | −1.2 | 13.1 | 6.7 | −2.6 | 113.5 | 71.3 |
The absolute fold-change was determined using semi-quantitative RT-PCR on 5 genes from the 4 hour time point and compared to the microarray analysis. In all cases numbers are relative to vehicle control.