Table 3.
Characterization of the polymorphic PATRR22 alleles
| PATRR22 | Size (bp) | Accession number | Homology between proximal and distal arms (%) | ΔG (kcal/mol) | ΔG/nt (kcal/mol) |
|---|---|---|---|---|---|
| Standard A allele | 583 | AB261997a | 98.6 | 12.57 | 0.022 |
| Standard B allele | 595 | AB538236 | 98.7 | 9.66 | 0.016 |
| Variant B allele (Case 5) | 595 | AB538238 | 98.0 | 14.03 | 0.024 |
| Standard C allele | 597 | AB538237 | 98.3 | 13.24 | 0.022 |
| Variant B1 allele (Case 15) | 553 | AB533274 | 100.0 | 2.71 | 0.005 |
| Variant C1 allele (Case 15) | 509 | AB533275 | 98.8 | 5.47 | 0.011 |
| Variant C2 allele (Case 16) | 539 | AB533276 | 99.6 | 5.67 | 0.011 |
| Variant C3 allele (Case 16) | 457 | AB533277 | 96.9 | 19.90 | 0.044 |
| Flanking AT-rich region (A allele) | 355 | AB261997a | 89.3 | 49.35 | 0.139 |
aAB261997 includes sequence information of both PATRR22 and flanking AT-rich region of A allele.