Table 1.
Accession no. (NCBI) | Protein name | Sequence coverage (%) | Unique spectra | Total spectra |
---|---|---|---|---|
fSUR1 only | ||||
Q09427 | SUR1 | 46 | 143 | 588 |
Q61743 | Kir6.2 | 11 | 4 | 4 |
Q76G10 | Hsp40 | 26 | 7 | 9 |
P19378 | Hsc70 | 57 | 43 | 72 |
P46633 | Hsp90α | 29 | 20 | 26 |
P11499 | Hsp90β | 39 | 30 | 43 |
O54981 | HOP | 16 | 6 | 6 |
Q8K3H8 | Calnexin | 13 | 7 | 10 |
fSUR1 + Kir6.2 | ||||
Q09427 | SUR1 | 48 | 126 | 377 |
Q61743 | Kir6.2 | 21 | 10 | 18 |
Q76G10 | Hsp40 | 37 | 9 | 12 |
P19378 | Hsc70 | 61 | 33 | 57 |
P46633 | Hsp90α | 26 | 19 | 25 |
P11499 | Hsp90β | 34 | 24 | 35 |
O54981 | HOP | 7 | 3 | 3 |
Q8K3H8 | Calnexin | 13 | 7 | 8 |
HA-Kir6.2 only | ||||
Q09427 | SUR1 | 8 | 7 | 9 |
Q61743 | Kir6.2 | 30 | 22 | 100 |
Q76G10 | Hsp40 | 29 | 6 | 10 |
P19378 | Hsc70 | 57 | 42 | 95 |
P46633 | Hsp90α | 17 | 9 | 13 |
P11499 | Hsp90β | 23 | 13 | 18 |
O54981 | HOP | 0 | 0 | 0 |
Q8K3H8 | Calnexin | 0 | 0 | 0 |
a In total, 10 proteomics experiments were performed: three in INS-1 cells infected with fSUR1 virus only, five in INS-1 cells infected with fSUR1 and Kir6.2 viruses, and two in INS-1 cells infected with HA-Kir6.2 virus only. The fSUR1 or HA-Kir6.2 protein complexes in INS-1 cell lysates were affinity purified using FLAG- or HA-antibody–conjugated agarose beads and subjected to mass spectrometry analyses as described in Materials and Methods. Results from three proteomic experiments representing each condition are shown. Note Hsp40, Hsc70, and Hsp90α and -β are present in all experiments. The protein HOP is found in only a subset of experiments overexpressing fSUR1 alone or fSUR1 plus Kir6.2 (6 of 8 experiments), so is the protein calnexin (5 of 8 experiments); neither proteins showed up in cells overexpressing HA-Kir6.2 only. NCBI, National Center for Biotechnology Information.