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. 2010 Jun 11;5(6):e11087. doi: 10.1371/journal.pone.0011087

Table 3. Comparison of predicted ORFs of pCLL with plasmids of Clostridium perfringens.

pCLL locus Putative function of pCLL gene product Function of closest C. perfringens relative of gene product, strain, and/or identity Size (aa) Coding Sequence position
pCLL_0004 Hypothetical protein Hypothetical protein, C. perfringens pCP13, PCP53, and conserved hypothetical, C. perfringens E str. JGS1987, CPC_A0335, 53/78 (67%) 78 717–953
pCLL_0005 VirD4 component TraG/TraD family, C. perfringens D str. JGS1721, CJD_A0258, 383/747 (51%) 739 1017–3236
pCLL_0006 Hypothetical protein Putative membrane protein, C. perfringens C str. JGS1495, CPC_A0332, 162/353 (45%), hypothetical protein C. perfringens pCP13, PCP50, 162/353 (45%) 711 3241–5376
pCLL_0007 Hypothetical protein Hypothetical protein, C. perfringens pCP13, PCP49, 47/87 (54%) 91 5377–5652
pCLL_0008 Hypothetical protein Hypothetical protein, C. perfringens pCP13, PCP48, 66/124 (53%) 138 5764–6402
pCLL_0009 Hypothetical protein Conserved hypothetical, C. perfringens C str. JGS1495, CPC_A0328, 406/627 (64%) 637 6458–8371
pCLL_0010 Hypothetical protein Hypothetical protein, C. perfringens pCP13, PCP45, 55/161 (34%) 167 8373–9053
pCLL_0011 Probable cell wall-binding protein Probable cell wall-binding protein, C. perfringens E str. JGS1987, AC3_A0050, 224/370 (60%), TcpG, C. perfringens C str. JGS1495, CPC_A0146, 83/134 (61%) 389 9114–10283
pCLL_0012 Hypothetical protein Conserved hypothetical protein, C. perfringens D str. JGS1721, CJD_1944, 106/267 (39%) 270 10302–11114
pCLL_0013 Hypothetical protein Conserved hypothetical protein, C. perfringens C str. JGS1495, CPC_A0323, 42/82 (51%) 91 11397–11672
pCLL_0014 Hypothetical protein Conserved hypothetical protein, C. perfringens D str. JGS1721, CJD_A0233, 48/123 (39%) 136 11678–12088
pCLL_0015 Hypothetical protein Conserved hypothetical protein, C. perfringens C str. JGS1495, CPC_A0321, 200/377 (53%) 379 12102–13241
pCLL_0016 Hypothetical protein Conserved hypothetical protein, C. perfringens D str. JGS1721, CJD_A0227, 55/116 (47%) 365 13267–14388
pCLL_0017 Conserved hypothetical protein Hypothetical protein, C. perfringens str. 13 pCP13, PCP34, 31/74 (41%) 171 14453–14968
pCLL_0040 Resolvase/recombinase Resolvase/Recombinase, C. perfringens D str. JGS 1721, CJD_1891, 78/210 (37%) 210 33462–34094
pCLL_0042 Site-specific recombinase resolvase family DNA-invertase, C.perfringens CPE str. F4969, AC5_A0225, 80/191 (41%) 181 34265–34810
pCLL_0045 Replication protein Replication protein, C. perfringens B str. ATCC 3626, AC1_A0161, 164/388 (42%) 446 35980–37320
pCLL_0047 Putative ATPase Putative ATPase, C. perfringens E str. JGS1987, AC3_0198, 145/302 (48%) 297 38545–39438
pCLL_0048 Hypothetical protein Hypothetical protein, C. perfringens E str. JGS1987, AC3_0197, 21/41 (51%) 119 39431–39790
pCLL_0051 Putative LexA repressor LexA repressor, C. perfringens B str. ATCC 3626, AC1_A0290, 34/78 (43%) 235 40570–41277
pCLL_0053 Hypothetical protein Conserved hypothetical protein, C. perfringens B str. ATCC 3626 AC1_A0334, 33/105 (31%) 120 41747–42109
pCLL_0056 Cell wall binding repeat domain protein Cell wall binding repeat domain protein, C. perfringens D str. JGS1721, CJD_0682, 83/183 (45%) 152 42953–47533