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Boxplots of expression measures of all probe sets and of probe sets containing (GGG)1-motifs obtained from the intensity data shown in Fig. 1 (mouse data set) using different versions of the hook method [32]: The PMonly approach in combination with the NN sensitivity model (hook) only insufficiently corrects the (GGG)1-effect. The combinations of PMonly and NN+GGG (hook NN+GGG) and PM-MM difference and NN (hook PM-MM) provide good results.
