TABLE 1.
MLST |
Spa type | Coagulase serotype | coa PCR-RFLP genotype | PFGE pulsotype(s) | Toxin gene profile | No. of RUsb in SIRU locus: |
SCCmec type | No. of locations where foundc | Prefecture(s) where found | Source(s) | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CC | ST | 1 | 5 | 7 | 13 | 15 | 21 | |||||||||
5 | 5 | t001 | II | 676H | B6 | hlg, lukE/lukD | 2 | 30< | 1 | 3 | 999 | 9 | II | 1 | Tochigi | Human wound |
5 | 5 | t002 | II | 676B | D | hlg, lukE/lukD | 2 | 3 | 1 | 3 | 1 | 9 | II | 1 | Unknown | Bovine milk |
5 | 5 | t179 | II | 676B | B1, B2, B3 | hlg, lukE/lukD | 2 | 3 | 1 | 3 | 1 | 9 | 3 | Fukuoka | Bovine milk | |
5 | 5 | t375 | II | 676B | E1, E2 | hlg, lukE/lukD | 2 | 2 | 1 | 3 | 999 | 9 | II | 1 | Unknown | Bovine milk |
5 | 5 | t375 | II | 676B | E3 | hlg, lukE/lukD | 2 | 2 | 1 | 3 | 999 | 9 | II | 1 | Ibaraki | Human pus |
5 | 5 | t5259 | II | 676B | B4, B5 | hlg, lukE/lukD | 2 | 3 | 1 | 3 | 1 | 6 | 1 | Fukuoka | Bovine milk | |
6 | 1362 | t701 | IV | 676D | Q11 | hlg, lukE/lukD | 2 | 7 | 999 | 4 | 1 | 9 | 1 | Ishikawa | Bovine milk | |
6 | 6 | t2360 | IV | 676D | Q10 | hlg, lukE/lukD | 2 | 7 | 999 | 4 | 1 | 10 | 1 | Tottori | Bovine milk | |
7 | 789 | t091 | III | 757B | H1, H2 | hlg, lukE/lukD, sagB, sagD | 999 | 999 | 3 | 2 | 3 | 9 | 2 | Iwate, Saga | Bovine milk | |
8 | 8 | t008 | III | 595B | G2 | hlg, lukE/lukD | 3 | 3 | 1 | 0 | 1 | 9 | 1 | Iwate | Bovine milk | |
8 | 8 | t008 | III | 595C | G6 | hlg, lukE/lukD | 3 | 3 | 2 | 0 | 1 | 9 | 1 | Hokkaido | Bovine milk | |
8 | 8 | t008 | III | 352A | G3 | hlg, lukE/lukD | 3 | 3 | 3 | 0 | 1 | 9 | 1 | Ishikawa | Bovine milk | |
8 | 8 | t4133 | III | 514A | G1 | hlg, lukE/lukD | 3 | 3 | 3 | 0 | 1 | 9 | 1 | Gunma | Bovine milk | |
8 | 72 | t4359 | V | 676F | M | hlg, lukE/lukD | 3 | 9 | 999 | 3 | 7 | 4 | 1 | Ishikawa | Bovine milk | |
8 | 630 | t377 | III | 595B | G4, G5 | hlg, lukE/lukD | 4 | 6 | 2 | 0 | 1 | 7 | 1 | Iwate | Bovine milk | |
12 | 12 | t160 | VII | 676D | R5 | hlg, lukE/lukD | 1 | 7 | 1 | 3 | 999 | 6 | 1 | Chiba | Bovine milk | |
12 | 12 | t160 | VII | 676D | R2 | hlg, lukE/lukD | 1 | 7 | 1 | 3 | 1 | 6 | 1 | Saga | Bovine milk | |
12 | 12 | t3418 | VII | 676D | R3 | hlg, lukE/lukD | 1 | 7 | 1 | 4 | 1 | 5 | 1 | Tochigi | Bovine milk | |
12 | 1369 | t160 | VII | 676D | R4 | hlg, lukE/lukD | 1 | 7 | 1 | 2 | 999 | 6 | 1 | Saitama | Bovine milk | |
12 | 1369 | t160 | VII | 676D | R1 | hlg, lukE/lukD | 1 | 7 | 1 | 2 | 1 | 6 | 1 | Saitama | Bovine milk | |
15 | 1 | t1775 | VII | 514B | Q7 | hlg, lukE/lukD, pvl | 1 | 999 | 3 | 1 | 2 | 9 | 1 | Tochigi | Bovine milk | |
15 | 81 | t127 | VII | 514B | Q3 | hlg, lukE/lukD | 1 | 999 | 2 | 0 | 2 | 6 | 1 | Ishikawa | Bovine milk | |
15 | 81 | t127 | VII | 514B | Q8 | hlg, lukE/lukD | 1 | 999 | 3 | 1 | 1 | 6 | 1 | Iwate | Bovine milk | |
15 | 81 | t127 | VII | 595F | Q6 | hlg, lukE/lukD, pvl | 1 | 999 | 2 | 0 | 1 | 6 | 1 | Hokkaido | Bovine milk | |
15 | 81 | t127 | VII | 595F | Q1, Q5 | hlg, lukE/lukD | 1 | 999 | 2 | 1 | 1 | 6 | 2 | Iwate, Gunma | Bovine milk | |
15 | 81 | t127 | VII | 595F | Q2 | hlg, lukE/lukD | 1 | 999 | 2 | 1 | 2 | 6 | 1 | Kochi | Bovine milk | |
15 | 81 | t127 | VII | 595F | Q4 | hlg, lukE/lukD | 1 | 999 | 3 | 1 | 1 | 6 | 1 | Fukuoka | Bovine milk | |
15 | 81 | t127 | VII | 595F | Q9 | hlg, lukE/lukD | 1 | 999 | 3 | 1 | 2 | 6 | 1 | Nara | Bovine milk | |
15 | 188 | t189 | V | 676A | K6 | hlg, lukE/lukD | 1 | 999 | 2 | 1 | 4 | 5 | 1 | Tochigi | Bovine milk | |
15 | 188 | t189 | V | 676E | K11 | hlg, lukE/lukD | 1 | 999 | 1 | 2 | 4 | 5 | 1 | Hokkaido | Bovine milk | |
15 | 188 | t189 | V | 676E | K1, K2, K4, K5, K7, K8, K9, K10, K12, K13 | hlg, lukE/lukD | 1 | 999 | 3 | 2 | 4 | 5 | 8 | Hokkaido, Iwate, Saitama, Shizuoka, Gifu, Fukuoka | Bovine milk | |
15 | 188 | t1858 | V | 676E | K3 | hlg, lukE/lukD | 1 | 999 | 3 | 1 | 4 | 6 | 1 | Tottori | Bovine milk | |
20 | 20 | t164 | VIII | 595E | U1, U4, U7 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 7 | 3 | Iwate | Bovine milk | |
20 | 20 | t164 | VIII | 595E | U11 | hlg | 3 | 10 | 2 | 1 | 4 | 7 | 1 | Hiroshima | Bovine milk | |
20 | 20 | t164 | VIII | 595E | U5 | hlg, lukE/lukD | 3 | 11 | 2 | 0 | 4 | 7 | 1 | Gunma | Bovine milk | |
20 | 20 | t164 | VIII | 595E | U10 | hlg | 3 | 11 | 2 | 1 | 4 | 7 | 1 | Tokyo | Bovine milk | |
20 | 20 | t693 | VIII | 595E | U9 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 0 | 1 | Tokyo | Bovine milk | |
20 | 20 | t2109 | VIII | 595E | U15 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 3 | 1 | Ishikawa | Bovine milk | |
20 | 20 | t3277 | VIII | 595E | U2, U18 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 6 | 2 | Hokkaido, Ishikawa | Bovine milk | |
20 | 20 | t3332 | VIII | 595E | U3 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 5 | 1 | Hokkaido | Bovine milk | |
20 | 20 | t3929 | VIII | 514B | U13, U14 | hlg, lukE/lukD | 3 | 8 | 2 | 1 | 4 | 3 | 1 | Hyogo | Bovine milk | |
20 | 20 | t4542 | VIII | 595E | U8 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 3 | 1 | Saitama | Bovine milk | |
20 | 20 | t5267 | VIII | 595E | U6 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 10 | 1 | Niigata | Bovine milk | |
20 | 20 | t5412 | VIII | 595E | U12 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 11 | 1 | Hokkaido | Bovine milk | |
20 | 1368 | t3277 | VIII | 595E | U17 | hlg, lukE/lukD | 3 | 10 | 2 | 1 | 4 | 6 | 1 | Hyogo | Bovine milk | |
20 | 1370 | t881 | VIII | 595E | U16 | hlg, lukE/lukD | 3 | 10 | 2 | 0 | 4 | 6 | 1 | Ishikawa | Bovine milk | |
25 | 25 | t078 | II | 595A | V5 | hlg, lukE/lukD | 3 | 5 | 3 | 2 | 4 | 8 | 1 | Hokkaido | Bovine milk | |
25 | 25 | t258 | II | 514B | V4 | hlg, lukE/lukD | 3 | 5 | 3 | 2 | 3 | 9 | 1 | Fukuoka | Bovine milk | |
25 | 26 | t287 | II | 595A | V1, V2 | hlg, lukE/lukD | 3 | 5 | 2 | 2 | 4 | 2 | 1 | Tokyo | Bovine milk | |
25 | 1372 | t258 | II | 514B | V3 | hlg, lukE/lukD | 3 | 3 | 3 | 2 | 3 | 9 | 1 | Gunma | Bovine milk | |
30 | 243 | t021 | IV | 676C | J | hlg, pvl | 2 | 3 | 2 | 2 | 2 | 8 | 1 | Hokkaido | Bovine milk | |
45 | 508 | t050 | VII | 676G | T1, T3 | hlg | 999 | 999 | 2 | 0 | 1 | 9 | 2 | Gunma, Fukuoka | Bovine milk | |
45 | 508 | t362 | VII | 676G | T4 | hlg | 999 | 999 | 2 | 0 | 1 | 1 | 1 | Kochi | Bovine milk | |
45 | 508 | t630 | VII | 676G | T2 | hlg | 999 | 999 | 2 | 0 | 1 | 8 | 1 | Fukuoka | Bovine milk | |
59 | 59 | t216 | VII | 757E | S | hlg | 2 | 999 | 4 | 1 | 4 | 7 | 1 | Iwate | Bovine milk | |
88 | 88 | t1028 | III | 757A | F3, F4 | hlg, lukE/lukD | 2 | 999 | 3 | 2 | 0 | 3 | 1 | Shizuoka | Bovine milk | |
88 | 88 | t1028 | III | 757A | F5 | hlg, lukE/lukD | 2 | 999 | 3 | 3 | 0 | 3 | 1 | Shizuoka | Bovine milk | |
88 | 88 | t5264 | III | 757A | F1 | hlg, lukE/lukD | 1 | 999 | 3 | 2 | 2 | 7 | 1 | Ishikawa | Bovine milk | |
88 | 1360 | t729 | III | 757A | F2 | hlg, lukE/lukD | 2 | 999 | 3 | 1 | 2 | 9 | 1 | Hokkaido | Bovine milk | |
97 | 97 | t224 | VI | 838A | O43 | hlg, lukE/lukD, lukM/lukF′-PV | 3 | 999 | 4 | 3 | 2 | 7 | 1 | Hyogo | Bovine milk | |
97 | 97 | t224 | VI | 838A | O56 | hlg, lukE/lukD | 3 | 999 | 4 | 3 | 2 | 7 | 1 | Hyogo | Bovine milk | |
97 | 97 | t267 | VI | 838A | O58 | hlg, lukE/lukD | 4 | 999 | 1 | 3 | 2 | 9 | 1 | Hyogo | Bovine milk | |
97 | 97 | t267 | VI | 838A | O38 | hlg, lukE/lukD | 4 | 999 | 2 | 2 | 2 | 9 | 1 | Okinawa | Bovine milk | |
97 | 97 | t359 | VI | 838A | O57 | hlg, lukE/lukD | 4 | 999 | 1 | 3 | 2 | 8 | 1 | Hyogo | Bovine milk | |
97 | 97 | t1109 | VI | 838A | O47, O48 | hlg, lukE/lukD | 4 | 999 | 3 | 3 | 2 | 2 | 1 | Saitama | Bovine milk | |
97 | 97 | t1234 | VI | 838A | O42 | hlg, lukE/lukD | 4 | 999 | 2 | 3 | 2 | 8 | 1 | Gunma | Bovine milk | |
97 | 124 | t224 | VI | 838A | O46 | hlg, lukE/lukD | 4 | 999 | 2 | 5 | 1 | 7 | 1 | Hyogo | Bovine milk | |
97 | 124 | t189 | VI | 838A | L | hlg, lukE/lukD | 4 | 999 | 3 | 5 | 999 | 5 | 1 | Tochigi | Bovine milk | |
97 | 124 | t224 | VI | 838A | O55 | hlg, lukE/lukD | 3 | 999 | 3 | 4 | 1 | 7 | 1 | Gunma | Bovine milk | |
97 | 124 | t224 | VI | 838A | O53 | hlg, lukE/lukD | 4 | 999 | 1 | 3 | 1 | 7 | 1 | Nara | Bovine milk | |
97 | 124 | t458 | VI | 838A | O50 | hlg, lukE/lukD | 4 | 999 | 3 | 4 | 999 | 1 | 1 | Nara | Bovine milk | |
97 | 124 | t458 | VI | 838A | O51, O52 | hlg, lukE/lukD | 4 | 999 | 3 | 4 | 1 | 1 | 1 | Niigata | Bovine milk | |
97 | 124 | t2453 | VI | 838A | P | hlg, lukE/lukD | 4 | 999 | 2 | 4 | 2 | 2 | 1 | Tochigi | Bovine milk | |
97 | 124 | t5265 | VI | 838B | O49 | hlg, lukE/lukD | 4 | 999 | 3 | 2 | 2 | 4 | 1 | Tochigi | Bovine milk | |
97 | 352 | t203 | VI | 595E | O23 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 3 | 2 | 7 | 1 | Yamagata | Bovine milk | |
97 | 352 | t267 | VI | 352B | O22 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 3 | 2 | 9 | 1 | Hiroshima | Bovine milk | |
97 | 352 | t267 | VI | 595E | O6 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 2 | 2 | 9 | 1 | Hokkaido | Bovine milk | |
97 | 352 | t267 | VI | 595E | O1, O4, O10, O11, O16, O17, O18, O32 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 3 | 2 | 9 | 6 | Hokkaido, Tochigi, Chiba, Kyoto, Hyogo | Bovine milk | |
97 | 352 | t267 | VI | 757C | O7 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 2 | 2 | 9 | 1 | Ishikawa | Bovine milk | |
97 | 352 | t267 | VI | 757C | O21 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 4 | 2 | 9 | 1 | Hyogo | Bovine milk | |
97 | 352 | t267 | VI | 838A | O45 | hlg, lukE/lukD, lukM/lukF′-PV | 999 | 999 | 4 | 2 | 2 | 9 | 1 | Tottori | Bovine milk | |
97 | 352 | t267 | VI | 838A | O41 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 2 | 2 | 2 | 9 | 1 | Okinawa | Bovine milk | |
97 | 352 | t267 | VI | 838A | O3 | hlg, lukE/lukD | 4 | 999 | 3 | 3 | 1 | 9 | 1 | Hyogo | Bovine milk | |
97 | 352 | t267 | VI | 838A | O36, O39, O40, O44 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 2 | 2 | 9 | 3 | Fukuoka, Okinawa | Bovine milk | |
97 | 352 | t267 | VI | 838A | O2 | hlg, lukE/lukD | 4 | 999 | 4 | 3 | 2 | 9 | 1 | Hokkaido | Bovine milk | |
97 | 352 | t267 | VI | 838A | O9, O12, O13, O31, O34, O35 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 3 | 2 | 9 | 5 | Tokyo, Hyogo, Hiroshima, Kochi | Bovine milk | |
97 | 352 | t359 | VI | 838A | O24 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 3 | 2 | 2 | 8 | 1 | Hokkaido | Bovine milk | |
97 | 352 | t359 | VI | 838A | O5, O20, O30 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 3 | 2 | 8 | 3 | Tochigi, Hyogo, Kochi | Bovine milk | |
97 | 352 | t521 | VI | 595E | O19 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 3 | 2 | 10 | 1 | Hyogo | Bovine milk | |
97 | 352 | t1201 | VI | 838A | O15 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 2 | 2 | 2 | 5 | 1 | Hyogo | Bovine milk | |
97 | 352 | t1201 | VI | 838A | O28, O29 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 3 | 2 | 2 | 5 | 2 | Tochigi, Hyogo | Bovine milk | |
97 | 352 | t1201 | VI | 676F | O26 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 3 | 2 | 2 | 5 | 1 | Niigata | Bovine milk | |
97 | 352 | t1201 | VI | 757D | O27 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 3 | 2 | 2 | 5 | 1 | Ishikawa | Bovine milk | |
97 | 352 | t2844 | VI | 838A | O25 | hlg, lukE/lukD, lukM/lukF′-PV | 3 | 999 | 3 | 2 | 2 | 4 | 1 | Tokyo | Bovine milk | |
97 | 352 | t2844 | VI | 838A | O8 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 3 | 2 | 2 | 4 | 1 | Chiba | Bovine milk | |
97 | 352 | t3782 | VI | 838A | O37 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 3 | 2 | 2 | 4 | 1 | Okinawa | Bovine milk | |
97 | 352 | t5352 | VI | 838A | O14 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 3 | 2 | 7 | 1 | Gunma | Bovine milk | |
97 | 1366 | t1109 | VI | 838A | O33 | hlg, lukE/lukD, lukM/lukF′-PV | 4 | 999 | 4 | 3 | 2 | 2 | 1 | Niigata | Bovine milk | |
97 | 1367 | t521 | VI | 838A | O54 | hlg, lukE/lukD | 4 | 999 | 3 | 2 | 2 | 10 | 1 | Tochigi | Bovine milk | |
509 | 89 | t375 | I | 676A | A3 | none | 2 | 999 | 1 | 1 | 1 | 7 | IIIa | 1 | Tokyo | Human wound |
509 | 89 | t375 | I | 676A | A4, A6 | hlg | 2 | 999 | 1 | 1 | 1 | 7 | IVE | 2 | Ibaraki | Human phlegm, human synovial fluid |
509 | 89 | t375 | I | 676A | A5, A7, A8 | hlg | 2 | 999 | 1 | 1 | 1 | 7 | Untypeable | 3 | Ibaraki, Gunma | Human eye mucus, human synovial fluid |
509 | 89 | t5266 | I | 676A | A1 | hlg, sagB | 2 | 999 | 1 | 0 | 1 | 6 | IIIa | 1 | Unknown | Bovine milk |
509 | 1373 | t5262 | I | 676A | A2 | hlg | 2 | 999 | 1 | 1 | 1 | 7 | Untypeable | 1 | Ibaraki | Human pus |
705 | 705 | t529 | VI | 595D | N33 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 999 | 999 | 999 | 1 | 1 | Chiba | Bovine milk | |
705 | 705 | t529 | VI | 595D | N5, N11, N12 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 999 | 999 | 0 | 1 | 3 | Gunma, Ishikawa, Okinawa | Bovine milk | |
705 | 705 | t529 | VI | 595D | N1, N2, N4, N7, N9, N10, N13, N14, N15, N16, N17, N18, N20, N22, N24, N27, N28, N29, N30, N31, N32, N34, N36 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 2 | 999 | 0 | 1 | 23 | Hokkaido, Tochigi, Saitama, Gunma, Ishikawa, Kochi, Hiroshima, Fukuoka, Okinawa | Bovine milk | |
705 | 705 | t529 | VI | 595D | N3, N8, N19, N37, N38 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 2 | 999 | 999 | 1 | 5 | Tokyo, Ishikawa, Gifu, Saga | Bovine milk | |
705 | 705 | t529 | VI | 595D | N25 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 3 | 2 | 0 | 1 | 1 | Hokkaido | Bovine milk | |
705 | 705 | t529 | VI | 595D | N6 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 4 | 999 | 0 | 1 | 1 | Ishikawa | Bovine milk | |
705 | 1363 | t529 | VI | 595D | N21, N23 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 999 | 999 | 0 | 1 | 2 | Tochigi, Okinawa | Bovine milk | |
705 | 1364 | t529 | VI | 595D | N26 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 999 | 999 | 0 | 1 | 1 | Tochigi | Bovine milk | |
705 | 1365 | t529 | VI | 595D | N35 | hlg, lukE/lukD, lukM/lukF′-PV, sagB, sagD | 1 | 999 | 999 | 999 | 999 | 1 | 1 | Hokkaido | Bovine milk | |
1359 | t5263 | II | 919A | C | hlg, sagB | 3 | 999 | 1 | 2 | 3 | 8 | 1 | Hyogo | Bovine milk | ||
1361 | t5260 | Untypeable | 919B | I | hlg, sagB, sagD | 999 | 999 | 3 | 999 | 3 | 7 | 1 | Iwate | Bovine milk | ||
1371 | t5261 | IV | 1000A | W | hlg | 3 | 999 | 3 | 999 | 3 | 8 | 1 | Hiroshima | Bovine milk |
MRSA isolates are highlighted in boldface. The major bovine lineages were CC97 and CC705.
“999” indicates that there was no amplification of SIRUs.
Locations were dairy farms or hospitals.