TABLE 1.
Sample | Tissue site (type of specimen) | Clinical diagnosis | Histopathology (GMS)a | PCR resultsb |
Result of sequencing | |
---|---|---|---|---|---|---|
HKG | ITS3-4 | |||||
1 | Lung | Aspergillosis | Sparse | + | + | Aspergillus flavus |
2 | Lung | Blastomycosis | Abundant | + | + | B. dermatitidis |
3 | Sinus | Aspergillosis | Sparse | − | − | |
4 | Prostate | Aspergillosis | Medium | + | + | A. flavus |
5 | Unknown | Zygomycosis/Aspergillosis | Sparse | + | + | Aspergillus niger |
6 | Nasal cartilage | Zygomycosis | Sparse | − | − | |
7 | Sinus | Aspergillosis | Medium | + | + | Aspergillus fumigatus |
8 | Sinus | Aspergillosis | Abundant | + | + | A. fumigatus |
9 | Nasal septum | Aspergillosis | Abundant | − | − | |
10 | Orbital tissue | Aspergillosis | Abundant | + | + | A. niger |
11 | Turbinate | Aspergillosis | Abundant | + | + | A. flavus |
12 | Sinus | Aspergillosis | Sparse | − | − | |
13 | Sinus | Aspergillosis | Abundant | + | + | A. flavus |
14 | Colon | Histoplasmosis | Abundant | + | + | H. capsulatum |
15 | Unknown | Aspergillosis | Abundant | + | + | A. flavus |
16 | Unknown | Aspergillosis | Abundant | + | + | A. flavus |
17 | Lung | Blastomycosis | Abundant | + | + | B. dermatitidis |
18 | Bone marrow | Histoplasmosis | Abundant | + | + | H. capsulatum |
19 | Bone marrow | Histoplasmosis | Abundant | + | + | H. capsulatum |
20 | Bone marrow | Histoplasmosis | Abundant | + | + | H. capsulatum |
21 | Bone marrow | Histoplasmosis | Abundant | + | + | H. capsulatum |
22 | Bone marrow | Histoplasmosis | Abundant | + | + | H. capsulatum |
23 | Lung | Aspergillosis | Sparse | − | − | |
24 | Cardiac muscle | Zygomycosis | Sparse | − | − | |
25 | Nasal | Aspergillosis | Medium | + | + | A. flavus |
26 | Skin | Zygomycosis | Abundant | + | + | Apophysomyces elegans |
27 | Colon | Aspergillosis | Abundant | + | + | A. fumigatus |
28 | Colon | Aspergillosis | Abundant | + | + | A. fumigatus |
29 | Lung | Histoplasmosis | Abundant | + | + | H. capsulatum |
30 | Skin | Zygomycosis | Medium | + | − | |
31 | Lung | Zygomycosis | Abundant | + | + | Rhizopus oryzae/Amylomyces rouxii |
32 | Lung | Zygomycosis | Sparse | + | − | |
33 | Kidney | Zygomycosis | Abundant | + | + | Rhizopus oryzae/A. rouxii |
34 | Lung | Zygomycosis | Sparse | + | + | R. oryzae/R. microsporus/R. azygosporus |
35 | Lung | Aspergillosis | Sparse | + | − | |
36 | Lung | Aspergillosis | Sparse | + | − | |
37 | Kidney | Aspergillosis | Medium | + | − | |
38 | Unknown | Zygomycosis | Sparse | + | + | R. oryzae/A. rouxii |
39 | Unknown | Zygomycosis | Sparse | + | + | R. oryzae/A. rouxii |
40 | Unknown | Zygomycosis | Sparse | + | + | Saksenaea vasiformis |
41 | Nasal | Zygomycosis | Medium | + | + | C. echinulata/C. septata |
42 | Forearm | Zygomycosis. | Medium | + | + | R. oryzae/R. azygosporus/R. microsporus |
43 | Lung | Zygomycosis | Sparse | + | + | R. microsporus/R. azygosporus |
44 | Abdominal | Zygomycosis | Medium | + | + | R. oryzae/A. rouxii |
45 | Lung | Zygomycosis | Sparse | + | − | |
46 | Skin | Zygomycosis | Abundant | + | + | R. microsporus/R. azygosporus |
47 | Spleen | Zygomycosis | Medium | + | + | R.s oryzae/A. rouxii |
48 | Skin | Zygomycosis | Medium | + | + | R. oryzae/A. rouxii |
49 | Axilla | Zygomycosis | Medium | + | + | R. oryzae/A. rouxii |
50 | Eye | Histoplasmosis | Abundant | + | + | H. capsulatum |
51 | Lung | Aspergillosis | Medium | + | + | A. fumigatus |
Fungal structures are reported as abundant, medium and sparse.
HKG, housekeeping gene (human β-globin gene). +, positive; −, negative.