Table 1.
Details of isolates used for analysis in this study
All isolates are JEV, except for MVE-1-51 which is a strain of Murray Valley encephalitis virus.
| Strain | Origin | Year of isolation | Host | Passage no. | GenBank accession no(s). |
|---|---|---|---|---|---|
| 05734 | India | 2005 | Human | EF623988 | |
| 691004 | Sri Lanka | 1969 | Human | Z34097 | |
| Autumn 4* | ‘USSR’ | 1943 | Human | 4 | FJ515932 |
| Beijing-1 | China | 1949 | Mosquito | L48961 | |
| Bennett* | Korea | Before 1951 | Human | 5 | FJ515927, FJ872376 |
| CH1392 | Taiwan | 1990 | Mosquito | AF254452 | |
| CNS138-11 | Malaysia | 1999 | Human | AY184213 | |
| CTS | China | 1955 | Human | AY243830 | |
| Equine* | Japan | 1947 | Equid | 27 | FJ515929, FJ872378 |
| FU | Australia | 1995 | Human | AF217620 | |
| GP78 | India | 1978 | Human | AF075723 | |
| HV1 | Taiwan | 1958 | Human | AF098735 | |
| Ishikawa | Japan | 1999 | Mosquito | AB051292 | |
| JaGAr01 | Japan | 1959 | Mosquito | AF069076 | |
| JaOArS982 | Japan | 1982 | Mosquito | NC_001437 | |
| JaOH0566 | Japan | 1966 | Human | AY508813 | |
| JaTH160 | Japan | 1960 | Human | AB269326 | |
| JE-82† | Korea | 1982 | Mosquito | Unknown | GQ415347 |
| JE-83† | Korea | 1983 | Mosquito | Unknown | GQ415348 |
| JE-84† | Korea | 1984 | Mosquito | Unknown | GQ415349 |
| JE-85† | Korea | 1985 | Mosquito | Unknown | GQ415350 |
| JE-86† | Korea | 1986 | Mosquito | Unknown | GQ415351 |
| JE-87† | Korea | 1987 | Mosquito | Unknown | GQ415352 |
| JE-88† | Korea | 1988 | Mosquito | Unknown | GQ415353 |
| JE-89† | Korea | 1989 | Mosquito | Unknown | GQ415354 |
| JE-91† | Korea | 1991 | Mosquito | Unknown | GQ415355 |
| JEV # 40783* | Korea | Before 1971 | Human | 8 | FJ515923 |
| JEV/sw/Mie/40/2004 | Japan | 2004 | Swine | AB241118 | |
| JKT5441 | Indonesia | 1981 | Mosquito | U70406 | |
| JKT6468 | Indonesia | 1981 | Mosquito | AY184212 | |
| K-29† | Korea | 1949 | Human | Unknown | GQ415356 |
| K87P39 | Korea | 1987 | Mosquito | AY585242 | |
| K94P05 | Korea | 1994 | Mosquito | AF045551 | |
| Kalinina* | Japan | 1935 | Human | 5 | FJ515928 |
| ‘Korea Jap B’* | Korea | Before 1950 | 7 | FJ515926, FJ872379 | |
| KV1899 | Korea | 1999 | Swine | AY316157 | |
| Ling | Taiwan | 1965 | Human | L78128 | |
| LYZ | China | 1957 | Human | AY243834 | |
| Matsunaga* | Japan | 1939 | Human | 3 | FJ515930, FJ872381 |
| MVE-1-51 | Australia | 1951 | Human | AF161266 | |
| Nakayama | Japan | 1935 | Human | EF571853 | |
| Nakayama mb-1* | Japan | 1935 | Human | 3 | FJ515931 |
| P20778 | India | 1958 | Human | AF080251 | |
| P3 | China | 1950 | Mosquito | U47032 | |
| Roum* | Korea | 1946 | Human | 5 | FJ515922, FJ872377 |
| SA14 | China | 1954 | Mosquito | JEU14163 | |
| T1P1 | Taiwan | 1997 | Mosquito | AF254453 | |
| Taira* | Japan | 1948 | Human | 5 | FJ515933, FJ872384 |
| V9-3182* | Japan | 1949 | Human | 5 | FJ515924 |
| V9-3702* | Japan | 1949 | Human | 9 | FJ515934 |
| V9-3901* | Japan | Before 1950 | Human | 8 | FJ515935, FJ872382 |
| V9-3902* | Japan | Before 1950 | Human | 8 | FJ515936, FJ872383 |
| V9-4358* | Japan | Before 1950 | Human | 6 | FJ515925 |
| V9-4399* | Japan | Before 1950 | Human | 7 | FJ515937, FJ872380 |
| WTP-70-22 | Malaysia | 1970 | Mosquito | U70421 | |
| XJ69 | China | 2007 | Mosquito | EU880214 |
*WRAIR isolates sequenced in this study.
†WRCEVA isolates sequenced in this study.