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. Author manuscript; available in PMC: 2010 Dec 1.
Published in final edited form as: Proteins. 2009 Dec;77(4):778–795. doi: 10.1002/prot.22488

Figure 5. Tree decomposition as generalization of biconnected component decomposition.

Figure 5

At left, the graph used in the SCWRL3 paper is shown along with its biconnected component decomposition. At right, a tree decomposition of the same graph is shown. Residues in blue and green illustrate conditions 2 and 3 of a tree decomposition being satisfied. The relevant conditions are shown below the tree decomposition. At each node of the tree, those residues that are members of set L are shown to the left of the vertical bar, and those of set R are shown to the right. Set L consists of those residues shared with the parent of each node, and R the remaining residues of the node.

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