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. 2010 Feb 26;17(3):123–137. doi: 10.1093/dnares/dsq005

Figure 2.

Figure 2

Ordination plot of bacterial genomes using NMDS. (A) Analysis with 50 species belonging to 12 phyla and 5 classes, and D. desulfuricans SSM1. (B) Analysis with six species within Deltaproteobacteria and D. desulfuricans SSM1. Distances were calculated from gene profiles based on COG families. The abbreviation corresponding to the KEGG organism code is used as the label for the species name (detailed explanations are described in Supplementary Table S1). The labels are colour-coded according to their taxonomic groups (phylum/class): red, D. desulfuricans SSM1 (def); orange, Deltaproteobacteria; yellow, Epsilonproteobacteria; blue, other Proteobacteria; purple, Firmicutes; green, Chlorobi; black, Aquificae, Thermotogae, and Deinococcus-Thermus; and grey, other bacteria.