Table 3.
Results of assembling Illumina Genome Analyzer (IGA) data
| HCMV strain | Total reads (no.) | DA* | IA (IAC or IAG)* | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| HCMV reads (no.) | HCMV reads (%) | HCMV genome coverage (reads nt−1) | Total Phrap contigs (no.) | HCMV Phrap contigs (no.) | HCMV Gap4 contigs (no.) | HCMV genome coverage (%) | Gaps between HCMV Gap4 contigs (no.) | Total length of gaps (nt) | Errors in HCMV Gap4 contigs (no.) | ||
| AD169 varUC† | 6264332 | 5788753 | 92 | 1267 | 10 | 6 | 1 | 100 | 0 | 0 | 1 |
| Towne varL† | 5079235 | 2390159 | 47 | 516 | 96 | 9 | 3 | 99.97 | 2 | 69 | 0 |
| HAN13 | 3157639 | 855653 | 27 | 184 | 137 | 19 | 6 | 99.78 | 5 | 506 | 7 |
| HAN20 | 7035348 | 1040651 | 15 | 224 | 405 | 8 | 2 | 99.97 | 1 | 68 | 2 |
| HAN38 | 7904170 | 591446 | 8 | 127 | 472 | 8 | 3 | 99.85 | 2 | 343 | 1 |
| 3301 | 5967563 | 197665 | 3 | 43 | 560 | 24 | 9 | 99.41 | 8 | 1378 | 1 |
*See Table 2 footnote.
†See Table 2 footnote.