Table 2. Most differentially expressed genes between patient categories.
| Gene Name | DF | DHF | DSS |
| ORM1-like 1 (S. cerevisiae) | −0.53 | −1.82 | 2.69 |
| transmembrane protein vezatin | −0.41 | −1.86 | 2.42 |
| dynactin 6 | −0.60 | −1.41 | 2.54 |
| high mobility group nucleosomal binding domain 3 | −0.71 | −1.01 | 2.52 |
| proteasome (prosome, macropain) subunit, alpha type, 4 | −0.75 | −0.53 | 2.28 |
| zinc finger protein 292 | −0.63 | −1.29 | 2.54 |
| THUMP domain containing 2 | −0.71 | −0.82 | 2.40 |
| similar to ribosomal protein L22 | −0.66 | −0.73 | 2.19 |
| PTX1 protein | −0.57 | −1.14 | 2.29 |
| LSM8 homolog, U6 small nuclear RNA associated (S. cerevisia | −0.65 | −0.78 | 2.20 |
| likely ortholog of mouse immediate early response, erythrop | −0.67 | −0.84 | 2.30 |
| chromosome 14 open reading frame 112 | −0.71 | −0.62 | 2.23 |
| histone acetyltransferase 1 | −0.66 | −0.70 | 2.17 |
| NA | −0.62 | −1.00 | 2.30 |
| HDCMA18P protein | −0.68 | −0.77 | 2.27 |
| SUMO-1 activating enzyme subunit 2 | −0.53 | −1.20 | 2.23 |
| small nuclear ribonucleoprotein polypeptide B″ | −0.58 | −1.27 | 2.40 |
| PRAM-1 protein | 0.44 | 1.41 | −2.16 |
| HCV NS3-transactivated protein 1 | −0.67 | −0.75 | 2.24 |
| immediate early response 3 interacting protein 1 | −0.55 | −1.03 | 2.16 |
| transmembrane protein 14B | −0.44 | −1.66 | 2.33 |
| PTX1 protein | −0.51 | −1.19 | 2.16 |
| C-type lectin superfamily 2, member D | −0.57 | −0.95 | 2.13 |
| mitochondrial ribosomal protein S18C | −0.70 | −0.53 | 2.14 |
| lymphotoxin beta receptor (TNFR superfamily, member 3) | 0.22 | 1.88 | −1.95 |
| RPA interacting protein | −0.70 | −1.09 | 2.58 |
| small nuclear ribonucleoprotein polypeptide G | −0.66 | −0.63 | 2.12 |
| CD14 antigen | 0.23 | 1.85 | −1.96 |
| RNA (guanine-9-) methyltransferase domain containing 1 | −0.57 | −1.08 | 2.23 |
| gene model 83 | −0.60 | −0.92 | 2.19 |
| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisia | −0.62 | −0.78 | 2.13 |
| myoneurin | −0.63 | −0.79 | 2.15 |
| G-rich RNA sequence binding factor 1 | −0.71 | −0.86 | 2.41 |
| cystatin C (amyloid angiopathy and cerebral hemorrhage) | 0.21 | 1.91 | −1.96 |
| TatD DNase domain containing 1 | −0.62 | −0.78 | 2.13 |
| zinc finger, ZZ domain containing 3 | −0.62 | −0.80 | 2.14 |
| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa | −0.43 | −1.47 | 2.17 |
| KIAA0020 | −0.67 | −0.94 | 2.39 |
| CGI-12 protein | −0.65 | −0.90 | 2.30 |
| thyroid hormone receptor interactor 3 | −0.66 | −0.65 | 2.12 |
| NudC domain containing 2 | −0.46 | −1.21 | 2.05 |
| Tax1 (human T-cell leukemia virus type I) binding protein 1 | −0.49 | −1.30 | 2.20 |
| programmed cell death 10 | −0.64 | −0.58 | 2.03 |
| TatD DNase domain containing 1 | −0.60 | −0.80 | 2.11 |
| KIAA0776 | −0.43 | −1.20 | 1.98 |
| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa | −0.73 | −0.22 | 1.99 |
| dolichyl-phosphate mannosyltransferase polypeptide 1, catal | −0.68 | −0.49 | 2.07 |
| similar to ribosomal protein L22 | −0.69 | −0.29 | 1.94 |
| cyclin C | −0.35 | −1.36 | 1.90 |
| translocase of inner mitochondrial membrane 17 homolog A (y | −0.55 | −0.99 | 2.11 |
| ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolest | −0.63 | −0.90 | 2.25 |
| transposon-derived Buster1 transposase-like protein gene | −0.61 | −0.81 | 2.13 |
| heat shock 10kDa protein 1 (chaperonin 10) | −0.48 | −1.17 | 2.08 |
| eukaryotic translation initiation factor 3, subunit 6 48kDa | −0.33 | −1.65 | 2.06 |
| proteasome (prosome, macropain) 26S subunit, ATPase, 6 | −0.60 | −0.69 | 2.03 |
| similar to bA486O22.3 (similar to RPS3A (ribosomal protein | −0.58 | −0.82 | 2.07 |
| proteasome (prosome, macropain) subunit, alpha type, 3 | −0.59 | −0.80 | 2.08 |
| baculoviral IAP repeat-containing 2 | −0.61 | −0.76 | 2.10 |
| chondroitin sulfate proteoglycan 6 (bamacan) | −0.56 | −0.98 | 2.13 |
| KIAA1040 protein | −0.64 | −0.74 | 2.15 |
| Rab geranylgeranyltransferase, beta subunit | −0.41 | −1.33 | 2.02 |
| dolichyl-phosphate mannosyltransferase polypeptide 1, catal | −0.61 | −0.73 | 2.08 |
| solute carrier family 43, member 2 | 0.46 | 1.25 | −2.09 |
| mitochondrial ribosomal protein L32 | −0.61 | −0.75 | 2.09 |
| caspase recruitment domain family, member 9 | 0.15 | 2.07 | −1.92 |
| ATP-binding cassette, sub-family E (OABP), member 1 | −0.49 | −1.11 | 2.07 |
| CD68 antigen | 0.04 | 2.07 | −1.65 |
| tubulin-specific chaperone a | −0.50 | −1.14 | 2.10 |
| EPM2A (laforin) interacting protein 1 | −0.05 | −2.29 | 1.84 |
| nucleolar protein 8 | −0.52 | −1.34 | 2.30 |
| kinectin 1 (kinesin receptor) | −0.52 | −1.10 | 2.13 |
| activated RNA polymerase II transcription cofactor 4 | −0.49 | −1.00 | 1.96 |
| COP9 constitutive photomorphogenic homolog subunit 4 (Arabi | −0.59 | −0.91 | 2.16 |
| heat shock 10kDa protein 1 (chaperonin 10) | −0.56 | −0.93 | 2.09 |
| chromosome 21 open reading frame 66 | −0.61 | −0.87 | 2.18 |
| apolipoprotein B48 receptor | 0.35 | 1.48 | −1.99 |
| peptidyl-prolyl isomerase G (cyclophilin G) | −0.59 | −0.88 | 2.13 |
| pinin, desmosome associated protein | −0.66 | −0.66 | 2.14 |
| heat shock 70kDa protein 14 | −0.59 | −0.78 | 2.06 |
| jumonji domain containing 3 | 0.26 | 1.72 | −1.95 |
| hemoglobin, alpha 1 | 0.30 | 1.46 | −1.83 |
| hypothetical protein MGC5509 | −0.52 | −1.11 | 2.13 |
| mitochondrial ribosomal protein L47 | −0.64 | −0.57 | 2.02 |
| mitochondrial ribosomal protein L1 | −0.57 | −0.81 | 2.02 |
| cylindromatosis (turban tumor syndrome) | −0.80 | −0.44 | 2.33 |
| stress-associated endoplasmic reticulum protein 1 | −0.48 | −1.10 | 2.03 |
| lectin, galactoside-binding, soluble, 9 (galectin 9) | 0.14 | 2.09 | −1.91 |
| zinc finger, DHHC domain containing 17 | −0.56 | −0.92 | 2.10 |
| hypothetical protein DKFZp586C1924 | −0.67 | −0.51 | 2.06 |
| dolichyl-phosphate mannosyltransferase polypeptide 1, catal | −0.60 | −0.65 | 2.00 |
| proteasome (prosome, macropain) subunit, alpha type, 2 | −0.67 | −0.65 | 2.17 |
| mitochondrial ribosomal protein L13 | −0.49 | −1.00 | 1.98 |
| DnaJ (Hsp40) homolog, subfamily A, member 1 | −0.84 | −0.19 | 2.23 |
| TGF beta-inducible nuclear protein 1 | −0.69 | −0.59 | 2.17 |
| solute carrier family 35 (CMP-sialic acid transporter), mem | −0.61 | −0.85 | 2.17 |
| Sjogren syndrome antigen B (autoantigen La) | −0.76 | −0.37 | 2.18 |
| source of immunodominant MHC-associated peptides | −0.47 | −1.06 | 1.97 |
| metaxin 3 | −0.51 | −1.06 | 2.07 |
| likely ortholog of mouse hypoxia induced gene 1 | −0.58 | −0.76 | 2.03 |
| thioredoxin domain containing 10 | −0.55 | −0.86 | 2.02 |
Values shown represent the contrast value for each gene. This is the standardized mean difference between the gene's expression in that class, versus its overall mean expression.