Table 1.
Previously published microsatellite markers near or in the APA locus of common bean that were used for genetic mapping in the SEQ1006 × RAZ106 population
| Marker | Reference | Motif | Associated gene (GenBank entry) | Expected allele size | Ta | Amplification patterna | Parental polym.b |
|---|---|---|---|---|---|---|---|
| BMd8 | Blair et al. (2003) | (CT)7 | Gibberellin 20-oxidase (U70530) | 176 | 55 | Single | Cc |
| BMd9 | Blair et al. (2003) | (CATG)4 | D-Lec 2 Phytohemagglutinin-L gene (X06336) | 135 | 45 | Multiple | Dc |
| BMd15 | Blair et al. (2003) | (AG)6 | Erythroagglutinating phyto-hemagglutinin gene (K03288) | 166 | 50 | Single | Dc |
| BMd16 | Blair et al. (2003) | (CATG)4 | Leucoagglutinating phytohemagglutinin gene (K03289) | 136 | 50 | NA | NA |
| BMd26 | Blair et al. (2003) | (GAT)6 | Alpha galactosidase (U12927) | 141 | 50 | Single | Cc |
| BMd30 | Blair et al. (2003) | (TTAA)3 | Cytosolic glutamine synthetase (U32582) | 134 | 50 | Single | M |
| PV-ag004 | Yu et al. (2000) | (AG)8 | Phytohemagglutinin pseudogene (X04660) | 201 | 55 | Multiple | Dc |
| PV-atct001 | Yu et al. (2000) | (ATCT)3 | Arcelin gene (M68913) | 193 | 50 | Multiple | Dc |
| PV-atgc001 | Yu et al. (2000) | (ATGC)4 | Erythroagglutinating phyto-hemagglutinin gene (K03288) | 126 | 55 | Multiple | D |
| PV-atgc002 | Yu et al. (2000) | (ATGC)4 | Leucoagglutinating phytohemagglutinin gene (K03289) | 144 | 55 | NA | NA |
Ta annealing temperatures in °C used in PCR reaction, C co-dominant polymorphic, D dominant polymorphic, M monomorphic, NA no amplification
aAmplification pattern refers to number of bands
bPolymorphism in the parental survey
cIndicates if marker had clear amplification product in the population and was used for mapping