8-OxoG |
5′-ATATACCGCG(OG)CCGGCCGATCAAGCTTATT-3′ |
|
3′-TATATGGCGC C GGCCGGCTAGTTCGAATAA-5′ |
Uracil |
5′-ATATACCGCGGUCGGCCGATCAAGCTTATT-3′ |
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3′-TATATGGCGCCGGCCGGCTAGTTCGAATAA-5′ |
5-OH-U |
5′-ATATACCGCGG(OH-U)CGGCCGATCAAGCTTATT-3′ |
|
3′-TATATGGCGCC G GCCGGCTAGTTCGAATAA-5′ |
5-OH-U bubble |
5′-GCTTAGCTTGGAATCGTATCATGTA(OU)ACTCGTGTGCCGTGTAGACCGTGCC-3′ |
|
3′-CGAATCGAACCTTAGCATAGGCACCCGACAAACACGGCACATCTGGCACGG-5′ |
8-oxoG bubble |
5′-GCTTAGCTTGGAATCGTATCATGTA(OG)ACTCGTGTGCCGTGTAGACCGTGCC-3′ |
|
3′-CGAATCGAACCTTAGCATAGGCACCCGACAAACACGGCACATCTGGCACGG-5′ |
THF (AP-site analogue) |
5′-ATATACCGCGG(THF)CGGCCGATCAAGCTTATT-3′ |
|
3′-TATATGGCGCCGGCCGGCTAGTTCGAATAA-5′ |