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. 2010 May 1;10:126. doi: 10.1186/1471-2148-10-126

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Copyright ©2010 Takata et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Functionally divergent sites among the PRR gene clades. Sequence logos indicate amino acid variation of type I (θ_I) and type II (θ_II) sites that were above the empirical cutoff values in the comparison between PRR1/TOC1 clade and PRR3 and 7 clade (A), between PRR1/TOC1 clade and PRR5 and 9 clade (B) and between PRR3 and 7 clade and PRR5 and 9 clade (C). Amino acids are color-coded by physicochemical property. Positions of amino acid residues (bottom) correspond to AtPRR1/TOC1 in PRR1/TOC1 clade vs PRR3 and 7 clade, AtPRR1/TOC1 in PRR1/TOC1 clade vs PRR5 and 9 clade and to AtPRR3 in PRR3 and 7 clade vs PRR5 and 9 clade. The regions represented in this figure are surrounded with blue boxes in Additional file 3. Sequence logos were generated with WebLogo version 2.8.2 [57,58].