Table 1.
Statistics for alternate assemblies. The last column indicates the average Ortholog Hit Ratio (a measure of assembly quality, see Annotation) of unigenes with hits to Bombyx mori.
| Contigs (Coverage) | Singletons | Assembly Size | BP in Singletons | B. m. Hits |  |
|
|---|---|---|---|---|---|---|
| CAP3 Defaults (-p 90 -h 20) | ||||||
| E. p. | 15,444 (8.39×) | 27,516 | 24.3 Mbp | 46.0% | 12,763 | 0.352 |
| P. z. | 17,983 (8.12×) | 28,884 | 25.1 Mbp | 43.0% | 16,113 | 0.356 |
| CAP3 -p 85 -h 90 | ||||||
| E. p. | 11,687 (10.07×) | 20,053 | 19.1 Mbp | 42.4% | 10,183 | 0.372 |
| P. z. | 13,332 (9.78×) | 20,563 | 19.5 Mbp | 38.9% | 12,740 | 0.375 |
| Celera Standard | ||||||
| E. p. | 23,263 (8.35×) | 13,444 | 20.6 Mbp | 21.3% | 11,625 | 0.384 |
| P. z. | 25,822 (8.05×) | 21,397 | 22.9 Mbp | 24.4% | 16,755 | 0.398 |
| Celera Final | ||||||
| E. p. | 17,110 (10.05×) | 10,934 | 16.4 Mbp | 21.3% | 9,393 | 0.402 |
| P. z. | 19,110 (9.63×) | 18,847 | 18.5 Mbp | 25.9% | 12,485 | 0.412 |