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. 2010 May 27;11:284. doi: 10.1186/1471-2105-11-284

Figure 1.

Figure 1

Codon delimited multiple sequence alignment. Two unaligned cDNA sequences with translated peptides (top-left). Peptide sequences are aligned (top-right) and cDNA codons are matched to their corresponding amino acids to create the codon-delimited alignment (bottom-right). Aligning the sequences by cDNA rather than by peptide results in partitioning of codons (bottom-left).