Table 2.
Simple linear model average residue square sum (ARSS) and correlation coefficients (r) for the correlation of individual PDFs with probe hybridization intensities
|
Data Set 1 |
Data Set 2 |
Data Set 3 |
Data Set 4 |
|||||
|---|---|---|---|---|---|---|---|---|
| r | ARSS | r | ARSS | r | ARSS | r | ARSS | |
| PHFE | 0.11 | 0.168 | 0.03 | 0.504 | 0.03 | 0.460 | 0.13 | 1.668 |
| PMFE | 0.29 | 0.156 | 0.27 | 0.468 | 0.32 | 0.414 | 0.28 | 1.568 |
| HairpinScore | 0.21 | 0.162 | 0.22 | 0.479 | 0.20 | 0.442 | 0.21 | 1.621 |
| DimerScore | 0.19 | 0.164 | 0.23 | 0.478 | 0.17 | 0.448 | 0.15 | 1.660 |
| ComplexityScore-2B | 0.08 | 0.169 | 0.05 | 0.503 | 0.02 | 0.461 | 0.09 | 1.684 |
| ComplexityScore-5B | 0.04 | 0.170 | 0.11 | 0.498 | 0.01 | 0.461 | 0.02 | 1.698 |
| ComplexityScore-8B | 0.01 | 0.170 | 0.15 | 0.493 | 0.01 | 0.461 | 0.12 | 1.675 |
| ComplexityScore-11B | 0.01 | 0.170 | 0.10 | 0.498 | 0.02 | 0.461 | 0.10 | 1.683 |
| BlastScore | 0.02 | 0.170 | 0.11 | 0.498 | 0.01 | 0.461 | 0.18 | 1.641 |
| PPBE | 0.36 | 0.148 | 0.30 | 0.460 | 0.65 | 0.269 | 0.48 | 1.301 |