Table 5.
Sequence signatures of the recurrent motifs derived using Cos = 0.95 and RMSD = 1.5 Åa
| Motif | Frequency | C | σ | dave/Dave | Consensus sequence |
|---|---|---|---|---|---|
| 3-mer | |||||
| 212 | 11 | −0.12 | 0.84 | 3.62 | A (81%) G (81%) U (72%) |
| 534 | 11 | 0.54 | 0.99 | 3.23 | G (63%) A (63%) A (90%) |
| 552 | 14 | −0.63 | 0.77 | 3.16 | A (71%) C (85%) C (64%) |
| 4-mer | |||||
| 567 | 16 | −0.34 | 0.84 | 2.79 | C (56%) G (81%) A (81%) A (75%) |
| 1389 | 28 | −1.65 | 0.67 | 2.45 | G (64%) A (57%) A (71%) A (75%) |
| 1862 | 14 | −1.33 | 0.62 | 3.32 | C (57%) G (71%) A (57%) A (64) |
| 5-mer | |||||
| 469 | 16 | −1.12 | 0.69 | 3.12 | G (75%) A (50%) A (68%) A (81%) G (62%) |
| 690 | 16 | −2.61 | 0.39 | 3.34 | C (50%) G (81%) A (50%) A (68%) A (81%) |
aSee footnotes to Table 1.