Table 2.

Percentage differences in NP sequence between arenavirus isolates

Nucleotide sequence differences (%) are shown above the diagonal; amino acid sequence differences (%) are shown below the diagonal.

Virus	LUJV	DANV	LCMV	MOPV	MOBV	IPPYV	LASV	MWV	GTOV	AMAV	MACV	CPXV	SABV	TCRV	JUNV	CHPV	OLVV	LATV	FLEV	CATV	PIRV	ALLV	BCNV	SKTV	NAAV	TAMV	PARV	WWAV	PICV
LUJV		38.7	38.9	39.7	42.0	40.4	41.6	40.7	46.9	47.6	45.0	46.6	46.5	46.0	46.7	46.7	46.9	48.0	45.5	45.6	44.0	45.1	46.2	47.1	46.4	49.4	46.2	47.2	45.8
DANV	41.3		19.5	39.0	38.4	38.4	39.7	37.3	45.0	46.7	45.2	45.3	45.3	46.4	44.8	45.3	46.0	44.4	44.0	45.2	43.2	45.1	44.8	45.3	46.2	49.2	45.3	45.2	45.3
LCMV	40.8	5.8		38.1	38.3	38.4	39.6	37.9	45.8	46.6	44.3	45.4	44.4	45.7	44.8	45.8	46.2	44.1	44.0	45.3	43.9	44.9	44.2	46.1	46.1	48.6	44.2	45.7	47.3
MOPV	43.7	34.9	36.3		29.8	33.7	31.9	34.5	46.9	46.3	44.7	43.6	45.8	46.2	46.0	46.3	45.3	44.8	45.3	44.7	44.6	44.5	45.1	44.8	46.0	49.3	44.6	44.6	44.2
MOBV	42.4	37.0	37.5	21.6		36.1	32.0	35.3	46.3	46.7	45.2	43.4	44.6	45.7	47.3	45.5	45.7	46.1	45.5	45.1	45.6	44.6	46.3	46.6	46.9	48.3	44.3	45.8	46.1
IPPYV	44.4	37.1	37.2	29.7	29.3		35.0	35.2	46.6	46.9	45.2	45.3	46.9	46.9	45.4	46.3	46.7	47.9	47.8	45.5	44.7	46.7	46.3	45.5	47.1	49.0	45.7	45.8	44.8
LASV	42.3	37.4	38.4	26.2	27.2	31.0		35.2	45.1	47.2	46.6	45.2	45.6	45.1	45.9	47.1	46.0	45.4	45.7	45.8	47.2	44.7	45.3	46.2	46.1	47.9	45.6	46.7	44.4
MWV	43.2	34.2	34.5	31.4	33.3	31.6	32.3		45.8	46.1	44.7	46.6	45.2	46.5	45.2	45.7	47.3	46.7	45.6	44.8	44.5	44.9	45.0	44.9	46.6	49.5	44.7	46.2	44.0
GTOV	52.6	49.6	48.5	48.7	49.9	49.6	49.4	47.7		24.5	30.7	26.6	34.0	32.3	30.4	32.4	39.2	37.6	41.2	42.2	41.3	42.8	42.8	42.3	41.8	45.2	41.4	42.4	41.3
AMAV	52.6	49.3	48.3	49.6	49.7	49.3	50.1	49.0	14.5		32.7	26.6	33.5	32.4	31.9	31.9	36.3	37.8	42.2	43.2	42.4	42.1	43.2	43.0	43.5	47.0	41.3	43.7	41.3
MACV	52.1	49.8	49.0	50.0	49.9	49.8	49.6	49.5	23.7	26.3		31.3	32.9	28.7	23.7	34.3	36.9	37.8	40.7	42.0	40.0	41.6	41.0	42.4	42.8	44.8	41.2	42.3	42.0
CPXV	51.6	47.7	46.7	47.9	48.2	49.4	48.4	50.0	17.9	17.4	25.9		34.2	32.6	32.0	33.0	37.3	37.2	42.4	42.5	42.5	41.4	43.9	43.9	45.1	47.0	41.9	43.2	42.7
SABV	51.7	48.5	47.6	49.4	48.7	49.9	49.3	48.6	29.6	28.2	28.3	29.1		35.3	33.3	25.2	40.1	38.8	43.1	42.7	43.0	41.3	41.7	43.9	44.5	44.9	42.2	42.4	42.3
TCRV	52.2	48.8	49.1	49.6	50.4	49.4	49.5	49.8	28.6	30.0	20.7	30.2	33.5		27.8	33.6	39.0	37.9	42.2	43.5	41.6	41.0	43.0	43.5	44.0	44.7	41.4	43.7	41.9
JUNV	53.0	49.5	49.2	50.2	51.4	50.9	50.4	50.1	25.4	26.6	12.2	27.3	29.8	21.5		32.8	37.4	37.7	41.3	42.7	40.9	41.3	43.7	42.7	44.5	45.4	42.3	43.7	42.3
CHPV	52.6	47.5	47.6	49.0	49.3	49.7	49.5	48.0	28.2	27.7	29.1	28.2	16.2	31.7	30.1		39.2	38.6	42.0	41.7	41.5	42.0	42.0	42.8	43.0	46.1	41.4	43.5	42.6
OLVV	53.5	49.6	49.9	50.4	50.5	51.4	49.7	50.6	38.0	37.6	37.8	36.1	38.2	40.0	39.1	38.0		27.7	39.7	41.8	39.7	39.1	41.6	42.8	42.6	44.5	40.3	42.5	39.7
LATV	53.3	47.7	48.1	49.0	50.4	51.3	50.7	48.6	35.9	37.3	37.2	35.6	37.9	39.7	38.8	38.1	19.2		41.0	41.2	38.7	39.6	41.8	42.4	40.9	43.0	38.4	42.0	41.5
FLEV	53.8	48.9	48.8	50.4	51.5	51.3	50.3	49.4	41.7	42.9	43.1	44.4	43.7	44.2	42.0	41.2	41.6	42.8		36.8	36.0	31.8	37.5	37.3	38.7	41.1	29.8	38.0	35.3
CATV	53.7	50.1	49.3	48.6	50.5	52.5	50.1	50.6	45.0	46.4	45.5	46.9	45.4	46.8	45.9	43.8	44.2	43.1	35.8		36.7	36.5	28.4	22.7	23.0	29.8	37.0	23.0	37.1
PIRV	49.8	45.1	44.8	48.0	50.6	48.0	50.6	47.5	41.7	43.3	43.6	44.1	43.5	43.1	43.3	41.6	40.4	40.3	32.4	37.5		34.8	36.4	36.8	38.4	39.8	35.8	38.0	34.6
ALLV	51.9	47.9	48.5	48.6	49.5	50.0	47.2	47.9	43.5	43.0	42.3	42.9	43.6	41.5	42.4	41.8	41.0	40.5	25.7	38.5	29.6		37.0	36.2	37.6	39.1	32.6	36.6	30.0
BCNV	52.5	48.8	47.8	48.9	51.4	50.7	50.6	49.4	45.2	45.9	45.9	47.0	45.1	46.1	45.7	43.6	43.2	41.8	34.9	17.8	36.4	35.4		26.6	28.6	30.8	36.3	27.9	37.3
SKTV	53.6	49.7	49.5	48.7	50.5	51.6	50.1	49.9	45.3	47.1	47.0	47.4	45.6	46.8	46.8	44.7	44.4	42.0	37.1	11.4	37.6	37.2	16.9		24.2	29.6	38.0	22.9	38.3
NAAV	52.2	49.1	48.6	48.5	51.1	52.4	50.4	50.4	44.2	45.1	46.1	46.2	45.3	45.8	44.5	43.2	44.7	41.7	36.3	14.6	38.1	36.7	20.5	15.4		30.2	37.4	16.0	38.1
TAMV	57.2	54.5	53.6	53.4	55.1	56.8	55.3	55.5	49.1	50.4	49.1	49.7	47.8	49.6	48.0	47.6	45.7	46.1	41.8	22.5	40.9	42.9	25.0	22.3	23.9		39.2	31.3	40.6
PARV	51.9	48.4	47.5	46.6	50.3	50.0	49.4	47.5	42.1	43.2	43.5	44.2	43.7	43.4	42.5	41.6	41.9	41.4	21.9	38.5	32.3	28.1	34.6	38.7	38.2	41.8		37.1	34.8
WWAV	52.8	49.9	49.3	47.8	50.5	50.9	50.3	50.3	44.8	45.3	44.4	46.3	44.9	45.5	45.0	43.6	44.1	42.2	37.8	13.5	37.1	36.9	18.4	14.3	9.3	23.7	39.2		36.7
PICV	52.2	50.2	50.5	48.0	51.0	49.8	50.1	47.7	43.1	43.3	44.2	45.7	43.0	44.0	44.0	42.8	42.9	42.6	30.8	37.0	29.6	23.8	36.1	37.0	36.9	40.4	32.9	35.8