Table 1.
Default parameter values used in the simulations
Symbol | Description | Value | Ref. |
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Polymerization rate | 100/s | (34, 35) |
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Depoly. rate (new) | 1/s | (4) |
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Depoly. rate (old) | 30/s | (4) |
kbr | Branching rate | 1.4 × 10-3/(s.u. s) | (9) |
kcap | Capping rate | 0.2/s | est. in (36) |
kon | Adhesion on-rate | 0.07/(s.u. s) | est. from (37) |
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Adhesion off-rate | 4 × 10-4/s | est. from (38) |
ksever | Severing rate | 0/(s.u. s) | N/A |
κ | Adhesion spring const. | 10-3 N/m | (38) |
a | Molecular scale | 3 nm | N/A (est.) |
ρnuc | Nucleation rate density | 20/(μm2 s) | N/A |
Δz | Branching region | 10 nm | N/A (est.) |
Δy | Branching region | 50 nm | N/A (est.) |
Δadh | Adhesion region | 10 nm | N/A (est.) |
η | Viscosity | 0.02 Pa s | (39) |
dt | Simulation time step | 10-5 s | N/A |