Table 3.

Pathovar-specific distribution of genes

The total number of genes assigned to the specific genomes included is 10 013. There are an additional 96 features that are used as controls and 99 features that are associated with phages and plasmids and thus not directly linked to a genome project. The total number of features on the array is 10 208.

Comparison	MG1655 (n=4070)		EDL933 (n=1787)		Sakai (n=373)		CFT073 (n=2486)		Intergenic (n=1297)
	n	(%)	n	(%)	n	(%)	n	(%)	n	(%)
86-24 versus ΔqseE
Decrease	871	21.40	263	14.72	33	8.85	127	5.11	33	2.54
Marginal decrease	253	6.22	93	5.20	18	4.83	53	2.13	10	0.77
Increase	558	13.71	406	22.72	83	22.25	235	9.45	395	30.45
Marginal increase	74	1.82	48	2.69	5	1.34	17	0.68	28	2.16
No change	2314	56.85	977	54.67	234	62.73	2054	82.62	831	64.07
86-24 versus ΔqseF
Decrease	183	4.50	69	3.86	9	2.41	33	1.33	10	0.77
Marginal decrease	280	6.88	114	6.38	24	6.43	37	1.49	14	1.08
Increase	304	7.47	207	11.58	50	13.40	213	8.57	285	21.97
Marginal increase	272	6.68	134	7.50	15	4.02	44	1.77	65	5.01
No change	3031	74.47	1263	70.68	275	73.73	2159	86.85	923	71.16
86-24 versus ΔqseG
Decrease	332	8.16	158	8.84	23	6.17	38	1.53	14	1.08
Marginal decrease	328	8.06	140	7.83	25	6.70	27	1.09	17	1.31
Increase	300	7.37	250	13.99	49	13.14	176	7.08	287	22.13
Marginal increase	217	5.33	88	4.92	15	4.02	47	1.89	62	4.78
No change	2893	71.08	1151	64.41	261	69.97	2198	88.42	917	70.70