Table 3.
Instances of micro-colinearity or conserved microsynteny between F. vesca and A. thaliana.
| GenBank | Fosmid | Gene | Putative function | Blastx match | Blastx E value | Arabidopsis locus |
|---|---|---|---|---|---|---|
| EU024823 | 01I13 | 4 | unknown protein | NP_568247 | E = 8.3e-30 | At5g11280 |
| EU024823 | 01I13 | 5 | OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3) | NP_196688 | E = 4.0e-31 | At5g11270 |
| EU024823 | 01I13 | 6 | HY5 (ELONGATED HYPOCOTYL 5); DNA binding/transcription factor | NP_568246 | E = 2.3e-39 | At5g11260 |
| EU024823 | 01I13 | 7 | CESA1 (CELLULOSE SYNTHASE 1); transferase, transferring glycosyl groups | NP_194967 | E = 7.0e-160 | At4g32410 |
| EU024823 | 01I13 | 9 | SHS1 (SODIUM HYPERSENSITIVE 1); binding/transporter | NP_194966 | E = 1.5e-76 | At4g32400 |
| EU024826 | 08G19 | 2 | floral homeotic protein AP3 | NP_191002 | E = 7.8e-25 | At3g54340 |
| EU024826 | 08G19 | 3 | putative protein (embryo defective 1967) | NP_566998 | E = 1.8e-39 | At3g54350 |
| EU024827 | 10B08 | 5 | ATP-dependent DNA helicase, putative | NP_174109 | E = 3.2e-38 | At1g27880 |
| EU024827 | 10B08 | 6 | unknown protein | NP_174106 | E = 6.4e-31 | At1g27850 |
| EU024831 | 13I24 | 3 | xanthine/uracil permease family protein | NP_566384 | E = 0 | At3g10960 |
| EU024831 | 13I24 | 4 | protein phosphatase-related | NP_566383 | E = 9.7e-53 | At3g10940 |
| EU024845 | 32L07 | 2 | SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) (AtSMC2-1) (AtSMC2-2) | NP_201047 | E = 5e-83 | |
| NP_190330 | E = 1.0e-80 | At5g47460 | ||||
| EU024845 | 32L07 | 3 | ATNOA1/ATNOS1/NOA1/NOS1 (nitrous oxide synthase 1) | NP_850666 | E = 3.0e-34 | At3g47450 |
|
EU024847 |
34E24 |
4 |
disease resistance protein (CC-NBS-LRR class), putative |
NP_201491 NP_201492 |
E = 5.8e-56 E = 1.0e-54 |
At5g66900 At5g66910 |
|
EU024847 |
34E24 |
6 |
disease resistance protein (CC-NBS-LRR class), putative |
NP_201491 NP_201492 |
E = 6.5e-63 E = 1.2e-59 |
At5g66900 At5g66910 |
|
EU024847 |
34E24 |
7 |
disease resistance protein (CC-NBS-LRR class), putative |
NP_201491 NP_201492 |
E = 3.9e-90 E = 1.9e-89 |
At5g66900 At5g66910 |
| EU024852 | 41O22 | 2 | terpene synthase/cyclase family protein | NP_176361 | E = 2.1e-55 | At1g61680 |
| EU024852 | 41O22 | 4 | terpene synthase/cyclase family protein | NP_176361 | E = 2.4e-56 | At1g61680 |
| EU024852 | 41O22 | 5 | zinc ion binding | NP_176362 | E = 8.0e-164 | At1g61690 |
| EU024856 | 48I08 | 1 | protein kinase, putative | NP_190214 | E = 2.5e-153 | At3g46290 |
| EU024856 | 48I08 | 2 | protein kinase-related | NP_190213 | E = 1.2e-25 | At3g46280 |
| EU024856 | 48I08 | 3 | protein kinase-related | NP_190213 | E = 6.6e-9 | At3g46280 |
| EU024860 | 51F10 | 1 | EMB1138 (EMBRYO DEFECTIVE 1138); ATP binding/ATP-dependent helicase | NP_001031943 | E = 7.0e-82 | At5g26742 |
| EU024860 | 51F10 | 3 | unknown protein | NP_568485 | E = 1.0e-8 | At5g26731 |
| EU024860 | 51F10 | 2 | unknown protein | NP_187245 | E = 8.2e-27 | At3g05940 |
| EU024860 | 51F10 | 4 | unknown protein | NP_001118586 | E = 1.3e-8 | At3g05936 |
| EU024863 | 52I20 | 1 | oxidoreductase | NP_568767 | E = 2.3e-25 | At5g51880 |
| EU024863 | 52I20 | 4 | unknown protein | NP_568766 | E = 1.7e-9 | At5g51840 |
| EU024863 | 52I20 | 2 | AGL42 (AGAMOUS LIKE 42); transcription factor | NP_568952 | E = 1.3e-22 | At5g62165 |
| EU024863 | 52I20 | 3 | unknown protein | NP_201023 | E = 6.9e-19 | At5g62170 |
| EU024863 | 52I20 | 6a | DNA binding/binding/protein binding/zinc ion binding | NP_567188 | E = 1.2e-44 | At4g00790 |
| EU024863 | 52I20 | 6b | unknown protein | NP_567189 | E = 0 | At4g00800 |
| EU024864 | 53J04 | 3 | unknown protein | NP_564783 | E = 8.5e-41 | At1g61667 |
| EU024864 | 53J04 | 6 | terpene synthase/cyclase family protein | NP_176361 | E = 1.2e-123 | At1g61680 |
| EU024871 | 76K13 | 4 | PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) | At: NP_564144 | E = 2.6e-54 | At1g21600 |
| EU024871 | 76K13 | 6 | wound-responsive family protein | At: NP_173580 | E = 3.9e-14 | At1g21610 |