Table 2.
Outer membrane proteins of Flavobacterium columnare predicted by PSORTb.
| Protein name | ORF # | COGa) | Approach/SNb) |
|---|---|---|---|
| Conserved hypothetical protein | ORF02881 | - | 2-D LC |
| Conserved hypothetical protein | ORF00226 | - | 2-D LC |
| Conserved hypothetical protein | ORF01938 | D | 2-D LC |
| Conserved hypothetical protein | ORF00224 | - | 2-D LC |
| Conserved hypothetical protein | ORF02143 | - | 2-D LC |
| Conserved hypothetical protein | ORF02328 | R | 2-D LC |
| Extracellular elastinolytic metalloproteinase | ORF00198 | - | 2-D LC |
| Fjo24 | ORF02628 | - | 2-D LC |
| Hypothetical protein | ORF02366 | - | 2-D LC |
| Hypothetical protein | ORF01273 | - | 2-D LC |
| Hypothetical protein | ORF01272 | - | 2-D LC |
| Hypothetical protein | ORF01485 | - | 2-D LC |
| Hypothetical protein | ORF02042 | P | 2-D LC |
| Lipoprotein, putative | ORF01143 | - | 2-D LC |
| Lipoprotein, putative | ORF02619 | - | Both/166, 167 |
| Omp assembly complex, YaeT protein | ORF02858 | M | 2-D LC |
| OmpA | ORF02005 | M | Both/132 |
| OmpA | ORF00341 | M | 2-D LC |
| OmpA family protein | ORF00085 | M | 2-D LC |
| OmpA/MotB family | ORF00937 | M | 2-D LC |
| OmpA/MotB family | ORF01639 | N | 2-D LC |
| OmpA/MotB family | ORF00225 | M | 2-DE/11, 12 |
| Outer membrane efflux protein | ORF00073 | MN | 2-D LC |
| Outer membrane insertion C- signal domain protein | ORF00187 | - | 2-D LC |
| Peptidyl-prolyl cis-trans isomerase C | ORF02829 | O | 2-D LC |
| Putative TonB-dependent receptor | ORF00266 | P | 2-D LC |
| RagA protein, putative | ORF00258 | P | 2-D LC |
| Secreted peptidase, family M23 | ORF01434 | M | 2-D LC |
| Secreted protein | ORF02176 | - | 2-DE/141 |
| Snf2 family helicase | ORF00742 | KL | 2-D LC |
| Tetratricopeptide repeat domain protein | ORF01855 | R | 2-D LC |
| TonB-dependent outer membrane receptor | ORF00779 | P | 2-D LC |
| TonB-dependent outer membrane receptor | ORF02179 | P | 2-D LC |
| TonB-dependent outer membrane receptor | ORF00147 | P | 2-D LC |
| TonB-dependent outer membrane receptor | ORF02172 | P | 2-D LC |
| TonB-dependent outer membrane receptor | ORF02232 | P | 2-D LC |
| TonB-dependent outer membrane receptor | ORF01690 | P | 2-D LC |
| TonB-dependent outer membrane receptor, putative | ORF00704 | P | 2-D LC |
| TonB-dependent outer membrane receptor, putative | ORF02424 | P | 2-D LC |
| TonB-dependent receptor plug domain protein | ORF01433 | P | 2-D LC |
| TonB-dependent receptor, putative | ORF01511 | P | 2-D LC |
| Transcriptional regulator, AraC family protein | ORF01879 | R | 2-D LC |
a) COG categories are as follows: M, cell wall/membrane/envelop biogenesis; D, cell cycle control, cell division, chromosome partitioning; P, inorganic ion transport and metabolism; S, function unknown; N, cell motility; R, general function prediction only; O, post-translational modification and protein turnover, chaperones; K, transcription; L, replication, recombination and repair; -, "No COGs".
b) SN indicates spot number marked on the 2-DE image (Figure 1).