Table 4. Sequencing analysis of the selected Chr6 QTL candidate genes.
| Gene | Non-syn | Syn | 5UTR | 3UTR |
|---|---|---|---|---|
|
Hk2 |
0 |
T816C (ss161109849) G1130T (ss161109850) |
0 |
(-)3885T
(ss161109823) |
|
|
|
(-)1139TA (ss161109851) T1325C (ss161109852) T1573C (ss161109853) T1876C (ss161109854) |
|
|
|
Dok1 |
G45A (D2N) T301C (V87A) |
T854C T1049C |
C8G (ss161109825) |
G1550(-) (ss161109830) |
|
Htra2 |
C1381T (T449I) (ss161109831) |
0 |
0 |
0 |
|
Antxr1 |
0 |
T472C**
(ss161109833) |
0 |
A2056G (ss161109834) C2057G (ss161109835) |
| Eefsec | 0 | 0 | 0 | 0 |
NP represents not present in the microarray. **: Out of the 10 genes sequenced in exons, only the silent single nucleotide polymorphism (SNP) in Antxr1 fit the haplotype. Non-syn: nonsynonymous SNP. Syn represents synonymous SNP.