Table 6. Sequencing analysis of the selected Chr10 QTL candidate genes.
| Gene | Non-syn | Syn | 5UTR | 3UTR |
|---|---|---|---|---|
|
Hebp2 |
0 |
C306T (ss161109845) C546G (ss161109846) G600A (ss161109847) |
A22G
(ss161109838) C44G
(ss161109839) A124G
(ss161109840) T147C
(ss161109841) A198T
(ss161109842) G208C (ss161109843) G219A (ss161109844) |
G1687A (ss161109848) |
|
Perp |
0 |
0 |
0 |
T816C (ss161109849) G1130T (ss161109850) (-)1139TA (ss161109851) T1325C (ss161109852) T1573C (ss161109853) T1876C (ss161109854) |
|
Tnfaip3 |
A2114C (E627A) (ss161109862) T2330C (L699P) (ss161109863) |
0 |
G148C (ss161109861) |
T4117G (ss161109864) T4123C (ss161109865) T4238C (ss161109866) |
|
Map3k5 |
0 |
T437G (ss161109867) C926T (ss161109868) G3431A (ss161109869) C3483T (ss161109870) |
0 |
0 |
| Ahi1 | 0 | G2346A (ss161109872) | 0 | (-)3323G (ss161109873) |
NP represents not present in the microarray. **: Out of the 10 genes sequenced in exons, only the silent single nucleotide polymorphism (SNP) in Antxr1 fit the haplotype. Non-syn: nonsynonymous SNP. Syn represents synonymous SNP.