Table 1.
Coding sequences, orthologous proteins, and their frequency in the 11 Vibrionaceae genomes used in this study
| Strains | No. genes in genome | No. CDS | No. orthologous groups in strain | % CDS found in core genome | % CDS found in orthologous group | Orthologous groups unique to: | |
|---|---|---|---|---|---|---|---|
| strain | species | ||||||
| Vibrio cholerae El Tor N16961 | 4009 | 3887 | 3433 | 49 (1899) | 91 (3525) | 11 (25) | 319 |
| V. cholerae O395 | 3998 | 3878 | 3537 | 49 (1902) | 95 (3684) | 49 (102) | 319 |
| V. parahaemolyticus RIMD 2210633 | 4708 | 4548 | 3977 | 42 (1918) | 90 (4095) | 24 (49) | 24 |
| V. vulnificus CMCP6 | 4796 | 4796 | 4122 | 40 (1910) | 90 (4290) | 16 (65) | 318 |
| V. vulnificus YJ016 | 4897 | 4758 | 4153 | 40 (1907) | 90 (4284) | 11 (24) | 318 |
| V. harveyi ATCC® BAA-1116™ | 6238 | 6040 | 4116 | 32 (1920) | 84 (5065) | 97 (469) | 97 |
| V. splendidus LGP32 | 4604 | 4431 | 3718 | 43 (1921) | 87 (3873) | 13 (44) | 13 |
| Aliivibrio fischeri MJ11 | 4175 | 4039 | 3540 | 48 (1918) | 90 (3642) | 10 (21) | 135 |
| A. fischeri ES114 | 4038 | 3882 | 3451 | 50 (1921) | 91 (3540) | 3 (11) | 135 |
| A. salmonicida LFI1238 | 4352 | 3839 | 3143 | 50 (1919) | 95 (3664) | 12 (124) | 12 |
| Photobacterium profundum SS9 | 5702 | 5489 | 3762 | 35 (1932) | 76 (4341) | 90 (322) | 90 |
The table presents the number of protein coding sequences (CDS) in each of the 11 Vibrionaceae genomes used in the comparative analysis, the numbers of orthologous groups found in each strain and the number of CDS encoding proteins in the core proteome. The numbers in brackets are the absolute counts. The inter-genomic search yielded a core genome comprised of 1,882 orthologous proteins.