Table 1.
pBEE99 open reading frames. Asterisks indicate possible pseudogenes.
| # | Start | End | Length | Strand | Match | Affiliation | E_value | %Identity |
|---|---|---|---|---|---|---|---|---|
| 1 | 246 | 1259 | 1012 | + | gb|AAA25553.1| PrgW | E. faecalis | 3.00E-164 | 59% |
| 2 | 1390 | 2058 | 667 | + | gi|22536356|ref|NP_687207.1| Protease, putative | S. agalactiae | 1.00E-20 | 38% |
| 3 | 2100 | 3728 | 1627 | + | gi|58616130|ref|YP_195766.1| PrgZ | E. faecalis | 2.00E-185 | 59% |
| 4 | 3731 | 4714 | 982 | − | ref|YP_003329053.1| PrgX | E. faecalis | 5.00E-63 | 99% |
| 5 | 5534 | 5914 | 379 | + | gi|29377901|ref|NP_817027.1| PrgR | E. faecalis V583 | 3.00E-66 | 96% |
| 6 | 5965 | 6186 | 220 | + | pir||C56272 PrgS | E. faecalis plasmid pCF10 | 5.00E-35 | 97% |
| 7 | 6539 | 6829 | 289 | + | gi|69246067|ref|ZP_00603794.1| Transposase IS3/IS911 | E. faecium DO | 3.00E-47 | 100% |
| 8 | 6865 | 7701 | 835 | + | gi|69246262|ref|ZP_00603875.1| Integrase, catalytic region | E. faecium DO | 5.00E-140 | 89% |
| 9 | 8127 | 12044 | 3916 | + | gi|29377905|ref|NP_817031.1| PrgB | E. faecalis V583 | 0 | 89% |
| 10* | 12142 | 12470 | 311 | + | gb|AAW51309.1| PrgU | E. faecalis | 9.00E-15 | 100% |
| 11 | 12498 | 13355 | 856 | + | gi|29377906|ref|NP_817032.1| PrgC | E. faecalis V583 | 3.00E-86 | 68% |
| 12 | 13397 | 14296 | 898 | + | gi|58616088|ref|YP_195777.1| PrgD | E. faecalis | 5.00E-120 | 97% |
| 13 | 14316 | 14750 | 433 | + | gi|29377908|ref|NP_817034.1| hypothetical protein EF_B0014 | E. faecalis V583 | 6.00E-67 | 88% |
| 14 | 14797 | 15024 | 226 | + | ref|YP_195779.1| PrgF | E. faecalis | 4.00E-32 | 100% |
| 15 | 15038 | 15334 | 295 | + | gi|29377910|ref|NP_817036.1| hypothetical protein EF_B0016 | E. faecalis V583 | 2.00E-48 | 96% |
| 16 | 15349 | 16149 | 799 | + | gi|58616084|ref|YP_195781.1| PrgH | E. faecalis | 4.00E-127 | 87% |
| 17 | 16151 | 16504 | 352 | + | gi|58616092|ref|YP_195782.1| PrgI | E. faecalis | 1.00E-47 | 82% |
| 18 | 16458 | 18848 | 2389 | + | gi|58616093|ref|YP_195783.1| PrgJ | E. faecalis | 0 | 97% |
| 19 | 18860 | 21373 | 2512 | + | gi|58616094|ref|YP_195784.1| PrgK | E. faecalis | 0 | 89% |
| 20 | 21509 | 21838 | 328 | − | No Hits Found | |||
| 21 | 22097 | 24031 | 1933 | + | gi|21693271|gb|AAM75218.1| Group II intron reverse transcriptase | E. faecalis | 2.00E-250 | 66% |
| 22 | 24304 | 24930 | 625 | + | gi|58616095|ref|YP_195785.1| PrgL | E. faecalis | 3.00E-84 | 78% |
| 23 | 24908 | 25159 | 250 | + | ref|YP_195786.1| PrgM | E. faecalis | 6.00E-35 | 97% |
| 24 | 25146 | 25754 | 607 | + | gi|58616097|ref|YP_195787.1| PcfA | E. faecalis | 3.00E-93 | 87% |
| 25 | 25867 | 26622 | 754 | + | gi|90962837|ref|YP_536752.1| hypothetical protein LSL_2159 | L. salivarius | 6.00E-11 | 39% |
| 26 | 26639 | 27097 | 457 | + | gi|58616114|ref|YP_195805.1| PcfS | E. faecalis | 9.00E-50 | 67% |
| 27 | 27143 | 27298 | 154 | + | No hits found | |||
| 28 | 27364 | 27852 | 487 | + | |113706806|ref|YP_195788.2| PcfB | E. faecalis | 4.00E-85 | 99% |
| 29 | 27852 | 29681 | 1828 | + | gi|58616099|ref|YP_195789.1| PcfC | E. faecalis | 0 | 91% |
| 30 | 29732 | 31891 | 2158 | + | gi|58616100|ref|YP_195790.1| PcfD | E. faecalis | 0 | 96% |
| 31 | 31924 | 32196 | 271 | + | ref|YP_195791.1| PcfE | E. faecalis | 2.00E-43 | 98% |
| 32 | 32442 | 32798 | 355 | + | gi|58616102|ref|YP_195792.1| PcfF | E. faecalis | 4.00E-56 | 100% |
| 33 | 32799 | 34484 | 1684 | + | gi|29377923|ref|NP_817049.1| PcfG | E. faecalis V583 | 2.00E-248 | 76% |
| 34 | 34517 | 34867 | 349 | + | gi|58616104|ref|YP_195794.1| PcfH | E. faecalis | 4.00E-49 | 77% |
| 35 | 35387 | 36727 | 1339 | − | gi|58616106|ref|YP_195796.1| PcfJ | E. faecalis | 7.00E-239 | 90% |
| 36 | 36727 | 37500 | 772 | − | gi|29377927|ref|NP_817053.1| hypothetical protein EF_B0034 | E. faecalis V583 | 5.00E-103 | 71% |
| 37 | 37605 | 38195 | 589 | − | gi|29377928|ref|NP_817054.1| hypothetical protein EF_B0035 | E. faecalis V583 | 3.00E-108 | 100% |
| 38 | 38219 | 38410 | 190 | − | gb|AAW51348.1| PcfM | E. faecalis | 8.00E-28 | 98% |
| 39 | 38395 | 38580 | 184 | − | ref|YP_195800.1| PcfN | E. faecalis | 3.00E-27 | 100% |
| 40 | 38876 | 39076 | 199 | + | ref|YP_195802.1| PcfP | E. faecalis | 5.00E-31 | 100% |
| 41 | 39178 | 39408 | 229 | − | ref|YP_195803.1| PcfQ | E. faecalis | 2.00E-37 | 100% |
| 42 | 39541 | 39957 | 415 | + | gi|58616113|ref|YP_195804.1| PcfR | E. faecalis | 6.00E-58 | 84% |
| 43* | 40023 | 40475 | 449 | + | gi|29377935|ref|NP_817061.1| PcfS | E. faecalis V583 | 2.00E-64 | 100% |
| 44 | 40489 | 40641 | 151 | + | dbj|BAH02365.1| hypothetical protein pMG2200_57 | E. faecalis | 2.00E-20 | 100% |
| 45 | 40653 | 41243 | 589 | + | ref|YP_195806.1| PcfT | E. faecalis | 9.00E-84 | 82% |
| 46 | 41249 | 41569 | 319 | + | gi|58616116|ref|YP_195807.1| PcfU | E. faecalis | 8.00E-53 | 94% |
| 47 | 41596 | 41664 | 67 | + | ref|NP_815781.1| hypothetical protein EF2118 | E. faecalis V583 | 2.00E-09 | 86% |
| 48 | 41677 | 41922 | 244 | + | dbj|BAH02368.1| hypothetical protein pMG2200_60 | E. faecalis | 5.00E-40 | 100% |
| 49 | 41976 | 42158 | 181 | + | dbj|BAG12397.1| hypothetical protein pMG2200_61 | E. faecalis | 1.00E-24 | 100% |
| 50 | 42353 | 43069 | 715 | + | gi|169635863|dbj|BAG12398.1| hypothetical proteinpMG2200_62 | E. faecalis | 3.00E-104 | 82% |
| 51* | 43207 | 44994 | 1784 | + | gi|169635864|dbj|BAG12399.1| BacL1 | E. faecalis | 7.00E-289 | 95% |
| 52 | 45180 | 45815 | 634 | + | gi|169635865|dbj|BAG12400.1| BacL2 | E. faecalis | 2.00E-105 | 100% |
| 53 | 45838 | 46269 | 430 | + | gi|169635866|dbj|BAG12401.1| putative holin | E. faecalis | 7.00E-49 | 79% |
| 54 | 46272 | 46799 | 526 | + | gi|169635867|dbj|BAG12402.1| hypothetical protein pMG2200_66 | E. faecalis | 7.00E-84 | 90% |
| 55 | 46842 | 49022 | 2179 | + | gi|169635868|dbj|BAG12403.1| BacA | E. faecalis | 0 | 100% |
| 56 | 49130 | 49672 | 541 | + | gi|169635869|dbj|BAG12404.1| BacI | E. faecalis | 8.00E-70 | 77% |
| 57 | 49739 | 50314 | 574 | + | gi|169635870|dbj|BAG12405.1| hypothetical protein | E. faecalis | 2.00E-88 | 87% |
| 58 | 50457 | 50789 | 331 | + | gi|29377949|ref|NP_817075.1| hypothetical protein EF_B0057 | E. faecalis V583 | 5.00E-57 | 100% |
| 59 | 50953 | 51555 | 601 | + | gi|29377950|ref|NP_817076.1| site-specific recombinase | E. faecalis V583 | 3.00E-84 | 83% |
| 60 | 51622 | 52416 | 793 | + | No Hits Found | |||
| 61 | 52956 | 53126 | 169 | − | No Hits Found | |||
| 62 | 53406 | 54218 | 811 | + | No Hits Found | |||
| 63 | 54379 | 55695 | 1315 | + | gi|29377952|ref|NP_817078.1| UvrA | E. faecalis V583 | 3.00E-237 | 97% |
| 64 | 55700 | 56206 | 505 | + | gi|29377891|ref|NP_817018.1| hypothetical proteinEF_C0016 | E. faecalis V583 | 2.00E-85 | 90% |
| 65 | 56154 | 56384 | 229 | + | ref|NP_817080.1| UvrC | E. faecalis | 1.00E-17 | 68% |
| 66 | 56462 | 56875 | 412 | − | gi|29377892|ref|NP_817019.1| hypothetical proteinEF_C0017 | E. faecalis V583 | 3.00E-59 | 85% |
| 67 | 56882 | 57121 | 238 | − | ref|NP_817020.1| RepB | E. faecalis V583 | 9.00E-36 | 100% |
| 68 | 57159 | 57845 | 685 | − | gi|29377809|ref|NP_816937.1| Transposase IS1216 | E. faecalis V583 | 3.00E-126 | 97% |
| 69 | 58530 | 61781 | 3250 | + | gi|72388797|gb|AAZ68037.1| Bee1 | E. faecalis | 0 | 100% |
| 70 | 61783 | 62514 | 730 | + | gi|72388798|gb|AAZ68038.1| Bee2 | E. faecalis | 5.00E-113 | 100% |
| 71 | 62579 | 64066 | 1486 | + | gi|72388799|gb|AAZ68039.1| Bee3 | E. faecalis | 2.00E-283 | 100% |
| 72 | 64152 | 65348 | 1195 | + | gi|72388800|gb|AAZ68040.1| Srt1 | E. faecalis | 6.00E-229 | 100% |
| 73 | 65345 | 66466 | 1120 | + | gi|72388801|gb|AAZ68041.1| Srt2 | E. faecalis | 2.00E-188 | 100% |
| 74 | 67237 | 68196 | 958 | + | gb|AAA68982.1| Transposase IS6770 | Insertion sequence IS6770 | 2.00E-185 | 99% |
| 75 | 68193 | 68423 | 229 | + | ref|ZP_00874586.1| PadR | S. suis | 1.00E-13 | 60% |
| 76 | 68765 | 69697 | 931 | − | gi|167746666|ref|ZP_02418793.1| hypothetical protein ANACAC_01377 | A. caccae DSM 14662 | 8.00E-102 | 55% |
| 77 | 69793 | 70422 | 628 | + | gi|124485630|ref|YP_001030246.1| hypothetical protein Mlab_0808 | M. labreanum Z | 7.00E-74 | 64% |
| 78 | 70604 | 71197 | 592 | + | gi|57854758|ref|YP_187535.1| Site-specific recombinase | S. epidermidis RP62A | 1.00E-52 | 65% |
| 79 | 71169 | 72206 | 1036 | + | gi|33416281|ref|NP_878027.1| Transposase Tn552 | S. aureus | 2.00E-114 | 59% |
| 80 | 72184 | 72612 | 427 | + | gi|67077955|ref|YP_245575.1| putative transposase | B. cereus E33L | 2.00E-31 | 54% |
| 81 | 72605 | 73423 | 817 | + | gi|49483988|ref|YP_041212.1| ATP-binding protein | S. aureus | 9.00E-94 | 62% |
| 82 | 73566 | 74162 | 595 | + | gb|AAW51342.1| PcfY | E. faecalis | 5.00E-93 | 87% |
| 83 | 74152 | 74466 | 313 | + | gi|58616121|ref|YP_195812.1| PcfZ | E. faecalis | 8.00E-45 | 94% |
| 84 | 74460 | 74681 | 220 | + | ref|YP_195813.1| UvrC | E. faecalis | 3.00E-35 | 95% |
| 85 | 74745 | 74954 | 208 | + | gb|AAO83067.1| hypothetical protein EF_A0075 | E. faecalis V583 | 1.00E-29 | 94% |
| 86 | 75424 | 75546 | 121 | + | No Hits Found | |||
| 87 | 75601 | 76038 | 436 | − | No Hits Found | |||
| 88 | 76130 | 76378 | 247 | + | ref|NP_817016.1| hypothetical protein EF_C0014 | E. faecalis V583 | 9.00E-36 | 95% |
| 89 | 76497 | 77813 | 1315 | + | gi|29377952|ref|NP_817078.1| UvrA | E. faecalis V583 | 1.00E-206 | 93% |
| 90 | 77817 | 78332 | 514 | + | gi|158021643|gb|ABW08102.1| hypothetical protein EF_C0016 | E. faecalis | 2.00E-88 | 91% |
| 91 | 78280 | 78447 | 166 | + | gb|ABW08103.1| hypothetical protein ABW08103 | E. faecalis | 2.00E-06 | 65% |
| 92 | 78559 | 78645 | 85 | + | gb|ABW08104.1| hypothetical protein ABW08104 | E. faecalis | 3.00E-18 | 100% |
| 93 | 78903 | 79217 | 313 | + | gi|29377955|ref|NP_817081.1| PrgN | E. faecalis V583 | 1.00E-38 | 80% |
| 94 | 79455 | 80237 | 781 | + | gi|29377956|ref|NP_817082.1| ParA | E. faecalis V583 | 4.00E-142 | 100% |
| 95 | 80230 | 80586 | 355 | + | gi|29377957|ref|NP_817083.1| hypothetical protein EF_B0065 | E. faecalis V583 | 8.00E-60 | 97% |