Table 3.
Genetic variability of SSR markers for functionally important genes in three populations of nine-spined sticklebacks.
| Gene ID | Locus | Total A | Baltic Sea | Lake 1 | Pyöreälampi | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Size (bp) | A | HE | FIS | Size (bp) | A | HE | FIS | Size (bp) | A | HE | FIS | |||
| ACAPRb | Ppgm2 | 3 | 382-414 | 3 | 0.573 | -0.017 | 410 | 1 | 0.000 | na | 414 | 1 | 0.000 | na |
| AE1 | Ppgm3 | 15 | 214-260 | 10 | 0.779 | -0.070 | 226-308 | 6 | 0.560 | 0.146 | 228 | 1 | 0.000 | na |
| ATP1A2 | Ppgm7 | 9 | 117-143 | 9 | 0.774 | -0.077 | 117-139 | 3 | 0.576 | -0.085 | 135 | 1 | 0.000 | na |
| ATP4A | Ppgm8 | 2 | 186-196 | 2 | 0.042 | 0.000 | 186 | 1 | 0.000 | na | 186 | 1 | 0.000 | na |
| ATP6V1Aa | Ppgm9 | 7 | 187-199 | 7 | 0.783 | -0.065 | 189-191 | 2 | 0.504 | -0.324 | 191 | 1 | 0.000 | na |
| ATP6V1Ab | Ppgm10 | 4 | 102-110 | 3 | 0.265 | 0.058 | 98-110 | 2 | 0.451 | -0.293 | 110 | 1 | 0.000 | na |
| CFTR | Ppgm11 | 10 | 129-159 | 9 | 0.593 | 0.157 | 139-143 | 2 | 0.359 | -0.278 | 149 | 1 | 0.000 | na |
| CLCN3 | Ppgm12 | 25 | 185-241 | 20 | 0.935 | -0.023 | 194-225 | 6 | 0.755 | 0.118 | 193-195 | 2 | 0.437 | -0.241 |
| CLCN7 | Ppgm14 | 8 | 245-266 | 6 | 0.626 | 0.001 | 254-261 | 4 | 0.746 | 0.107 | 256 | 1 | 0.000 | na |
| CSP2 | Ppgm16 | 3 | 184-192 | 3 | 0.490 | -0.360 | 184 | 1 | 0.000 | na | 184 | 1 | 0.000 | na |
| DIO1 | Ppgm17 | 4 | 162-166 | 4 | 0.545 | 0.123 | 162-166 | 2 | 0.254 | -0.150 | 166 | 1 | 0.000 | na |
| eEF1A1b | Ppgm18 | 5 | 217-229 | 5 | 0.715 | 0.125 | 227-229 | 2 | 0.223 | -0.122 | 225 | 1 | 0.000 | na |
| FERH1 | Ppgm19 | 4 | 217-235 | 4 | 0.352 | 0.054 | 232-235 | 2 | 0.496 | -0.007 | 235 | 1 | 0.000 | na |
| FGF6a | Ppgm20 | 14 | 332-346 | 12 | 0.859 | -0.063 | 335-340 | 4 | 0.624 | 0.132 | 337 | 1 | 0.000 | na |
| FGF18 | Ppgm21 | 6 | 331-347 | 6 | 0.723 | -0.038 | 335-343 | 2 | 0.511 | 0.021 | 335 | 1 | 0.000 | na |
| GHR-1 | Ppgm24 | 5 | 193-205 | 3 | 0.121 | -0.030 | 192-193 | 2 | 0.223 | -0.122 | 193-195 | 2 | 0.156 | -0.070 |
| GHR-2 | Ppgm25 | 3 | 327-333 | 3 | 0.492 | -0.186 | 331-333 | 2 | 0.082 | -0.022 | 327 | 1 | 0.000 | na |
| GR1 | Ppgm26 | 3 | 295-297 | 3 | 0.532 | 0.060 | 297 | 1 | 0.000 | na | 297 | 1 | 0.000 | na |
| GTF2B | Ppgm28 | 2 | 290 | 1 | 0.000 | na | 288-290 | 2 | 0.418 | -0.394 | 290 | 1 | 0.000 | na |
| HPX | Ppgm29 | 13 | 126-169 | 10 | 0.746 | 0.163 | 137-157 | 3 | 0.586 | 0.289 | 155-158 | 2 | 0.504 | 0.090 |
| HSP25 | Ppgm30 | 4 | 159-177 | 4 | 0.605 | 0.243 | 159-175 | 2 | 0.478 | -0.045 | 173 | 1 | 0.000 | na |
| HSP47a | Ppgm31 | 2 | 107-109 | 2 | 0.042 | 0.000 | 107 | 1 | 0.000 | na | 107 | 1 | 0.000 | na |
| HSP70Aa | Ppgm32 | 27 | 283-529 | 26 | 0.959 | 0.094 | 305-329 | 4 | 0.662 | 0.146 | 317-319 | 2 | 0.466 | -0.163 |
| HSP70B | Ppgm35 | 6 | 324-348 | 6 | 0.416 | -0.102 | 324-342 | 2 | 0.462 | -0.533 | 324-342 | 2 | 0.283 | -0.179 |
| HSP90Ab | Ppgm36 | 7 | 198-232 | 7 | 0.629 | 0.205 | 204-206 | 2 | 0.156 | -0.070 | 204 | 1 | 0.000 | na |
| HSP90B | Ppgm37 | 7 | 244-271 | 6 | 0.728 | 0.085 | 232-259 | 3 | 0.429 | -0.068 | 247 | 1 | 0.000 | na |
| IGF-II | Ppgm39 | 8 | 387-401 | 8 | 0.700 | 0.107 | 389-397 | 3 | 0.160 | 0.480 | 393-397 | 3 | 0.159 | -0.051 |
| Kir2.1a | Ppgm40 | 8 | 293-327 | 8 | 0.713 | -0.169 | 301-321 | 2 | 0.511 | 0.103 | 297-301 | 2 | 0.156 | -0.070 |
| Kir2.2 | Ppgm42 | 6 | 289-299 | 6 | 0.578 | -0.082 | 291-293 | 2 | 0.223 | -0.122 | 289 | 1 | 0.000 | na |
| MYHe | Ppgm46 | 6 | 154-161 | 5 | 0.639 | 0.021 | 154-159 | 3 | 0.508 | -0.148 | 159 | 1 | 0.000 | na |
| NKCC1b | Ppgm47 | 10 | 117-159 | 10 | 0.744 | -0.065 | 119-159 | 3 | 0.629 | 0.171 | 123-125 | 2 | 0.042 | 0.000 |
| NPY2Rb | Ppgm48 | 25 | 406-471 | 19 | 0.918 | 0.001 | 423-475 | 6 | 0.793 | 0.002 | 469 | 1 | 0.000 | na |
| PKMa | Ppgm50 | 5 | 327-334 | 3 | 0.518 | 0.660 | 327-334 | 3 | 0.392 | -0.062 | 327-329 | 3 | 0.159 | -0.045 |
| PVALBb | Ppgm51 | 5 | 168-176 | 5 | 0.747 | 0.243 | 169-176 | 2 | 0.042 | 0.000 | 169 | 1 | 0.000 | na |
| SHH | Ppgm52 | 13 | 344-356 | 11 | 0.856 | 0.054 | 353-358 | 2 | 0.315 | 0.603 | 351-353 | 2 | 0.198 | -0.100 |
| SLC14 | Ppgm53 | 3 | 230-240 | 3 | 0.121 | -0.030 | 236 | 1 | 0.000 | na | 236 | 1 | 0.000 | na |
| SSR1b | Ppgm54 | 8 | 129-145 | 8 | 0.544 | 0.005 | 135-145 | 4 | 0.727 | 0.083 | 139 | 1 | 0.000 | na |
| T1R3 | Ppgm55 | 6 | 278-285 | 5 | 0.558 | -0.195 | 281-286 | 2 | 0.082 | -0.022 | 281 | 1 | 0.000 | na |
| TAAR | Ppgm56 | 9 | 123-141 | 8 | 0.614 | 0.050 | 123-139 | 4 | 0.659 | 0.305 | 127 | 1 | 0.000 | na |
| TBX4 | Ppgm57 | 3 | 278-292 | 3 | 0.318 | -0.048 | 278-290 | 2 | 0.380 | -0.314 | 290 | 1 | 0.000 | na |
| TTP | Ppgm58 | 3 | 317-321 | 3 | 0.291 | 0.140 | 317-321 | 2 | 0.283 | -0.179 | 317 | 1 | 0.000 | na |
A, number of observed alleles; HE, expected heterozygosity; na, not applied.