Table 1.
Elapsed times and speedups obtained with ParaHaplo applied on the HapMap 3 JPT and CHB data of chromosome 22.
| Elapsed times and speedups obtained with ParaHaplo on the phasing process | |||||||
|---|---|---|---|---|---|---|---|
| Number of Processing Units | Calculation Time | Speed Ratio a | |||||
| 1 | 9 | h | 56 | m | 54 | s | 1 |
| 2 | 4 | h | 56 | m | 13 | s | 2 |
| 4 | 2 | h | 26 | m | 40 | s | 4 |
| 8 | 1 | h | 21 | m | 39 | s | 7 |
| 16 | 39 | m | 2 | s | 15 | ||
| 32 | 21 | m | 5 | s | 28 | ||
| 64 | 11 | m | 49 | s | 50 | ||
| 128 | 7 | m | 4 | s | 85 | ||
| 256 | 5 | m | 32 | s | 108 | ||
aRatio of computation time of a single processor to computation time of multiple processors