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. Author manuscript; available in PMC: 2010 Jun 28.
Published in final edited form as: Atherosclerosis. 2008 Nov 5;204(2):601–607. doi: 10.1016/j.atherosclerosis.2008.10.030

TABLE 3. Association of inflammatory candidate gene SNPs and multivariable-adjusted log Lp-PLA2 in Offspring cohort (n=1535)*.

Allelic Variant Gene Protein Gene Codes for Chr* Location Major→ Minor Allele MAF Beta heterozygotes SE Beta homozygotes minor allele SE R2 P-Value q-Value
rs2033547 MEF2A myocyte enhancer factor 2A 15 980324 A|T 46.1 0.12 0.06 -0.15 0.08 1.0 3.20*10-4 0.25

rs1029153 CXCL12 chemokine (C-X-C motif) ligand 12 10 441871 A|G 26.7 -0.20 0.06 0.12 0.11 1.0 3.44*10-4 0.25

rs10520358 VEGFC vascular endothelial growth factor C 4 1779630 C|T 10.8 0.13 0.07 -0.90 0.27 1.0 5.12*10-4 0.25

rs6019910 PTGIS prostaglandin I2 synthase 20 476230 C|T 6.7 -0.08 0.08 -1.16 0.31 1.0 5.14*10-4 0.25

rs193276 CD44 CD44 molecule (Indian blood group) 11 35140414 T|C 23.6 -0.02 0.06 0.47 0.13 0.9 1.21*10-3 0.31

rs1051931 PLA2G7 phospholipase A2, group VII 6 46780902 A|G 19.4 0.21 0.06 0.21 0.15 0.9 1.26*10-3 0.31

rs10520358 VEGFC vascular endothelial growth factor C 4 1779630 C|T 10.8 -0.01 0.08 -1.17 0.31 0.9 9.14*10-4 0.96

rs4335431 TGFB2* transforming growth factor, β 2 1 2149460 T|C 7.5 0.26 0.09 -0.85 0.38 0.9 1.26*10-3 0.96
rs12058490 TGFB2* 1 2149476 A|G 7.9 0.24 0.09 -0.85 0.38 0.9 1.45*10-3 0.96

rs10128001 PTGER3 prostaglandin E receptor 3 1 712568 C|T 8.6 -0.26 0.09 -0.58 0.34 0.8 2.89*10-3 0.99

rs17038663 CX3CR1 chemokine (C-X3-C motif) receptor 1 3 392803 C|T 5.9 0.31 0.10 -0.29 0.70 0.7 3.29*10-3 0.99
*

Lp-PLA2 activity and mass adjusted for 19 covariates (see methods for details).

Q values were calculated within phenotype.

Partial R2 refers to the proportion of multivariable-adjusted Lp-PLA2 value explained by the specific SNP.

*

TGFB2 LD r2=0.95