TABLE 3. Association of inflammatory candidate gene SNPs and multivariable-adjusted log Lp-PLA2 in Offspring cohort (n=1535)*.
Allelic Variant | Gene | Protein Gene Codes for | Chr* | Location | Major→ Minor Allele | MAF | Beta heterozygotes | SE | Beta homozygotes minor allele | SE | R2 | P-Value | q-Value |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs2033547 | MEF2A | myocyte enhancer factor 2A | 15 | 980324 | A|T | 46.1 | 0.12 | 0.06 | -0.15 | 0.08 | 1.0 | 3.20*10-4 | 0.25 |
rs1029153 | CXCL12 | chemokine (C-X-C motif) ligand 12 | 10 | 441871 | A|G | 26.7 | -0.20 | 0.06 | 0.12 | 0.11 | 1.0 | 3.44*10-4 | 0.25 |
rs10520358 | VEGFC | vascular endothelial growth factor C | 4 | 1779630 | C|T | 10.8 | 0.13 | 0.07 | -0.90 | 0.27 | 1.0 | 5.12*10-4 | 0.25 |
rs6019910 | PTGIS | prostaglandin I2 synthase | 20 | 476230 | C|T | 6.7 | -0.08 | 0.08 | -1.16 | 0.31 | 1.0 | 5.14*10-4 | 0.25 |
rs193276 | CD44 | CD44 molecule (Indian blood group) | 11 | 35140414 | T|C | 23.6 | -0.02 | 0.06 | 0.47 | 0.13 | 0.9 | 1.21*10-3 | 0.31 |
rs1051931 | PLA2G7 | phospholipase A2, group VII | 6 | 46780902 | A|G | 19.4 | 0.21 | 0.06 | 0.21 | 0.15 | 0.9 | 1.26*10-3 | 0.31 |
rs10520358 | VEGFC | vascular endothelial growth factor C | 4 | 1779630 | C|T | 10.8 | -0.01 | 0.08 | -1.17 | 0.31 | 0.9 | 9.14*10-4 | 0.96 |
rs4335431 | TGFB2* | transforming growth factor, β 2 | 1 | 2149460 | T|C | 7.5 | 0.26 | 0.09 | -0.85 | 0.38 | 0.9 | 1.26*10-3 | 0.96 |
rs12058490 | TGFB2* | 1 | 2149476 | A|G | 7.9 | 0.24 | 0.09 | -0.85 | 0.38 | 0.9 | 1.45*10-3 | 0.96 | |
rs10128001 | PTGER3 | prostaglandin E receptor 3 | 1 | 712568 | C|T | 8.6 | -0.26 | 0.09 | -0.58 | 0.34 | 0.8 | 2.89*10-3 | 0.99 |
rs17038663 | CX3CR1 | chemokine (C-X3-C motif) receptor 1 | 3 | 392803 | C|T | 5.9 | 0.31 | 0.10 | -0.29 | 0.70 | 0.7 | 3.29*10-3 | 0.99 |
Lp-PLA2 activity and mass adjusted for 19 covariates (see methods for details).
Q values were calculated within phenotype.
Partial R2 refers to the proportion of multivariable-adjusted Lp-PLA2 value explained by the specific SNP.
TGFB2 LD r2=0.95