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. 2010 Mar 12;25(4):343–349. doi: 10.1093/mutage/geq011

Table I.

Comparison of Southern hybridization and PCR genotyping for the detection of CEB1 germ line minisatellite mutations in 10 spouse pairs and 20 offspring

Family no. Parent/child Southern-based CEB1 genotyping
PCR-based CEB1 genotyping
Allele 1a (kb) Allele 2 (kb) GMM status GMMb size (bp) Allele 1a (kb) Allele 2 (kb) GMM status GMMb size (bp)
1 Father 4.955 3.831 3.919 2.876
Mother 5.044 4.006 4.125 2.941
Child 1 3.982 2.303 Paternal contraction −1528 2.941 2.165 Paternal contraction −711
Child 2 5.044 4.972 No GMM detected 4.125 3.973 Paternal expansion [+54]c
2 Father 8.200 2.629 6.526 2.357
Mother 4.923 4.866 3.833 3.736
Child 1 4.920 2.636 No GMM detected 3.842 2.357 No GMM detected
Child 2 4.855 2.634 No GMM detected 3.779 2.357 Maternal expansion [+43]
3 Father 4.871 3.719 3.846 2.829
Mother 5.970 3.431 5.100 2.714
Child 1 5.970 4.052 Paternal expansion +333 5.100 3.000 Paternal expansion +171
4 Father 3.551 3.075 2.807 2.592
Mother 4.526 Not visualized 3.421 1.042
Child 1 4.529 3.545 No GMM detected 3.421 2.786 No GMM detected
Child 2 3.069 Not visualized No GMM detected 2.571 1.042 No GMM detected
5 Father 5.023 3.676 4.171 2.824
Mother 4.184 1.233 3.092 0.983
Child 1 3.592 1.231 Paternal contraction −84 2.785 0.983 Paternal contraction −39
Child 2 3.683 1.228 No GMM detected 2.829 0.983 No GMM detected
6 Father 4.883 2.067 8.400 1.705
Mother 4.030 3.970 3.000 2.957
Child 1 4.887 4.037 No GMM detected 8.400 3.000 No GMM detected
Child 2 3.978 2.066 No GMM detected 2.964 1.710 No GMM detected
7 Father 8.632 2.378 Not visualized 2.118
Mother 4.911 2.074 3.817 1.739
Child 1 8.756 2.074 Paternal expansion +124 Not visualized 1.747 Not informative
Child 2 8.614 2.069 No GMM detected Not visualized 1.739 Not informative
8 Father 8.440 5.024 6.454 4.071
Mother 10.093 Not visualized Not visualized 5.155
Child 1 10.093 5.040 No GMM detected Not visualized 4.122 Not informative
Child 2 10.096 8.456 No GMM detected Not visualized 6.500 Not informative
9 Father 2.443 1.576 2.185 1.189
Mother 8.206 4.269 6.286 3.167
Child 1 8.226 2.438 No GMM detected 6.286 2.185 No GMM detected
Child 2 8.414 2.762 Paternal expansion +319 6.426 2.396 Paternal expansion +211
Maternal expansion +208 Maternal expansion +140
Child 3 4.274 2.433 No GMM detected 3.161 2.185 No GMM detected
10 Father 4.208 2.020 3.107 1.587
Mother 4.666 3.676 3.555 2.435
Child 1 4.672 2.447 Paternal expansion +427 3.555 2.159 Paternal expansion +572
Child 2 4.080 3.689 Paternal contraction −128 2.971 2.435 Paternal contraction −136
a

Parental GMM progenitor alleles marked in bold type.

b

GMM ± base pairs expansion or contraction.

c

Bracketed results indicate one repeat GMM not confirmed in replicated PCR.