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. Author manuscript; available in PMC: 2011 Jun 1.
Published in final edited form as: J Biomed Inform. 2010 May 1;43(3):376–384. doi: 10.1016/j.jbi.2010.04.006

Table 1.

The comparison with related studies

Adverse
Event-
Drug
Drug Target
Prediction
Protein target-
Toxicity
PKI-Specific
Input Data
Size
Literature Physical
Kinome
Literature Chemical
Structure
Compt.
Prediction
Evaluation Kinome-wide
Analysis
Literature Compt.
Prediction
Evaluation Adverse
Events(#)
Kinase
Inhibitors(#)
Kinase
targets(#)
Studies Focusing on kinaes Toxicities
Present study C,M 71 20 266
General Studies predicting target Toxicities (not focused on kinases)
Hansen 2009[9] B 3 1* -
Bender A, et al. 2007[10] 166 - 0*
DART 2003[11] 187 - -
Apic 2005 [12] - - -
Studies predicting drug targets, but not their Toxicities Not Applicable
Fliri 2007 [13] C,B 5,923 2* 168*
Garten 2009 [14] 395*(a) 21*(b) 121*(c)
Liebovitch 2007 [15] - - -
Campillos M, et al. 2008[16] B 727 3* -

C=computational evaluation, B=biological validation, M= manual curation,

#

count,

*

: subset of gene targets with protein kinase activity (GO:0004672) or subset of drugs that are kinase inhibitors;

-: no specific detail about the input data

(a)

by searching the key words “side effect” in the Pharmspresso on line database (http://pharmspresso.stanford.edu/ygarten/Pharmspresso/html/index.html)

(b)

by searching the key words “human”, “kinase” and “Inhibitor” in the Pharmspresso on line database

(c)

by searching the key words “human” and “kinase” in the Pharmspresso on line database