TABLE 1.
Probe | Sequence (5′-3′) | Target organism | Helper(s) and/or competitor(s) | Reference |
---|---|---|---|---|
EUB338Ia | GCTGCCTCCCGTAGGAGT | Eubacteria | 1 | |
EUB338IIa | GCAGCCACCCGTAGGTGT | Eubacteria | 7 | |
EUB338IIIa | GCTGCCACCCGTAGGTGT | Eubacteria | 7 | |
PAO651a | CCCTCTGCCAAACTCCAG | “Ca. Accumulibacter” | 5 | |
PAO462a | CCGTCATCTACWCAGGGTATTAAC | “Ca. Accumulibacter” | 5 | |
PAO846a | GTTAGCTACGGCACTAAAAGG | “Ca. Accumulibacter” | 5 | |
Acc444 | CCCAAGCAATTTCTTCCC | Acc-SG1 | HAcc462 and HAcc426 | This study |
HAcc466b | CATCTACTCAGGGTATTAA | Acc-SG1 | This study | |
HAcc426b | CGCCGAAAGAGCTTTACA | Acc-SG1 | This study | |
Acc184 | GCTCCCAGAACGCAAGGT | Acc-SG2 | CAcc184 | This study |
CAcc184c | GCTCCCAGAGCGCAAGGT | Acc-SG2 | This study | |
Acc72 | GAGTGTTACCACCCCGTG | Acc-SG3 | This study | |
Acc119 | GGATACGTTCCGATGCTT | Acc-SG4 | HAcc99, HAcc139, and CAcc119 | This study |
HAcc99b | CTCACCCGTCCGCCACTC | Acc-SG4 | This study | |
HAcc139b | GCTACGTTATCCCCCACTC | Acc-SG4 | This study | |
CAcc119c | GGGCACGTTCCGATGCAT | Acc-SG4 | This study |
Used as EUBmix and PAOmix, respectively.
Helper probes are designated with an H.
Competitor probes are designated with a C.