Table 2.
Summary of the raw data assembly of 6 runs on 454 using newbler assembler.
| Category | Quantity | Percent |
|---|---|---|
| Total number of reads | 2,671,519 | - |
| Total number of bases | 633,429,850 | - |
| Number of searches | 2,081,652 | - |
| Seed hits found | 218,338,521 | - |
| Overlaps found | 6,694,880 | 3.07 |
| Overlaps reported | 4,244,624 | 1.94 |
| Overlaps used | 2,699,511 | 63.6 |
| Number assembled | 487,166 | - |
| Number partial | 1,135,496 | - |
| Number singleton | 829,693 | - |
| Number repeat | 185,527 | - |
| Number outlier | 33,637 | - |
| Large Contig Metrics | ||
| Number of contigs | 15,221 | - |
| Number of bases | 9,801,045 | |
| Average contig size | 643 | - |
| N50 contig size | 624 | - |
| Largest contig size | 1,797 | - |
| Q40 plus bases | 6,689,319 | 68.25 |
| Q39 minus bases | 3,111,726 | 31.75 |
| All Contig Metrics | ||
| Number of contigs | 456,985 | - |
| Number of bases | 110,333,787 | - |