Table 3.
Significant associations between AraC IC50 values and CNV regions.
| CNV ID | Permutation P-value | Chromosome: Region | Number of SNPs | Length (bp) | SNP start-SNP end | Nearest Gene(s) |
|---|---|---|---|---|---|---|
| chr22CNV102 | 0.013 | chr22:24092010-24128856 | 5 | 36847 | rs713878-rs84486 | LRP5L |
| 0.028 | chr22:23999581-24091936 | 14 | 92356 | rs6004527-rs713847 | LRP5L | |
| 0.028 | chr22:24135224-24239811 | 30 | 104588 | rs13057190-rs2780695 | LRP5L | |
| chr2CNV10 | 0.016 | chr2:89714801-89874746 | 9 | 159946 | rs2847840-rs842164 | FLJ40330 |
| chr12CNV76 | 0.020 | chr12:19364102-19442103 | 16 | 78002 | rs12825616-rs2565666 | PLEKHA5 |
| chr1CNV7 | 0.035 | chr1:243707190-243713984 | 6 | 6795 | rs10737772-rs12121903 | SMYD3,KIF26B |
| chr2CNV11 | 0.044 | chr2:110243431-110315618 | 11 | 72188 | rs3789735-rs17463266 | NPHP1 |
| chr12CNV83 | 0.047 | chr12:130368913-130378451 | 5 | 9539 | rs12319995-rs4759915 | GPR133 |
Association of CNV regions with the AraC phenotype.