Table 3.
Comparison with other methods
| # or % symmetric proteins found | ||||||
|---|---|---|---|---|---|---|
| Program name | Dataset | Fold name | ||||
| Others | SymD (SCOP 1.73, ASTRAL 40) |
|||||
| DAVROS [9] | CATH | LRR | 89% | 84-96% | ||
| TIM barrels | 60% | 69-83% | ||||
| β-trefoils | 67% | 95-100% | ||||
| OPAAS [6] | SCOP 1.55 | β-propellers | 86% | 100% | ||
| β-trefoils | 72% | 95-100% | ||||
| Swelfe [4] | ASTRAL 50 | 172¶ | 968-1385 | |||
| RQA [11] | SCOP 1.69 | β-propellers | 75% | 100% | ||
| β-trefoils | 86% | 95-100% | ||||
| GANGSTA+[5] | SCOP 1.73, | ferredoxin-like | 68 | 16-58 | ||
| ASTRAL 40 | immunoglobulin-like | 31 | 2-33 | |||
| β-trefoil | 23 | 39-41 | ||||
| four helical up-and-down bundle | 16 | 16-33 | ||||
| DNA clamp | 14 | 16-20 | ||||
| 7-bladed b-propellers | 13 | 35 | ||||
| TIM barrels | 12 | 223-268 | ||||
| γ-crystalline-like | 10 | 7-9 | ||||
¶ Repeat length >50.