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. 2010 Apr 13;19(6):1127–1136. doi: 10.1002/pro.399

Table II.

Winnowing the Reference Population Using H-Bond Satisfaction and H-Bond Energya

Structural category Reference H-bond satisfaction H-bond energy
H2S 11 (99.3) 12 (99.3) 11 (99.3)
H3S 44 (87.5) 51 (95.3) 38 (96.1)
H4S 42 (24.8) 43 (24.8) 49 (93.9)
H2H 12 (76.0) 12 (76.0) 14 (81.8)
H3H 44 (63.3) 45 (63.3) 43 (93.8)
H4H 46 (34.7) 38 (32.8) 42 (74.3)
S2H 13 (94.5) 12 (94.5) 13 (94.5)
S3H 38 (68.8) 38 (63.7) 34 (63.7)
S4H 41 (39.2) 44 (43.4) 39 (74.5)
S2S 7 (74.8) 6 (74.8) 3 (74.8)
S3S 24 (41.4) 25 (51.0) 24 (51.0)
S4S 34 (38.3) 40 (40.5) 20 (48.5)
a

Number of unique turns in three sets: (col. 2) the reference set (col. 3) H-bond satisfaction applied to col. 2, and (col. 4) H-bond energy applied to col. 3. Numbers in parentheses are the % of the experimentally determined turns captured by this set. The number of unique turns in successive sets can decrease with additional H-bonding constraints when the populations of newly stabilized turns increase, forcing other previously populated turns below the 0.5% threshold. Note that these simulations are for a polyalanyl model.