Table 4.
Percentile ranking of native-state interfaces relative to decoy states that differ from the native state by rotation of their helices
| PDB code | Helices | Full rank | LOOCV rank | PDB code | Helices | Full rank | LOOCV rank |
|---|---|---|---|---|---|---|---|
| 1p49 | 2 | 11.2% | 11.9% | 1c3w | 21 (3) | 99.5% | 99.4% |
| 2qts | 6 (3) | 30.4% | 20.3% | 1kf6 | 12 (2) | 99.7% | 99.7% |
| 2wit | 36 (3) | 47.2% | 30.7% | 3hqk | 24 (2) | 99.5% | 99.7% |
| 3b44 | 6 (3) | 91.4% | 84.9% | 2rdd | 39 (3) | 99.9% | 99.7% |
| 3h9v | 6 (3) | 86.8% | 86.9% | 2h8a | 4 | 99.8% | 99.7% |
| 2zuq | 4 | 95.3% | 89.7% | 2zxe | 12 | 99.9% | 99.8% |
| 2gfp | 12 | 92.4% | 91.1% | 2qjp | 20 (2) | 100.0% | 99.8% |
| 2uui | 12 (3) | 94.0% | 92.9% | 1ott | 20 (2) | 99.9% | 99.9% |
| 3ddl | 7 | 95.0% | 93.4% | 3cap | 14 (2) | 100.0% | 99.9% |
| 3gia | 12 | 94.6% | 93.5% | 3d4s | 7 | 100.0% | 99.9% |
| 1iwo | 10 (2) | 93.4% | 94.2% | 3b9w | 33 (3) | 100.0% | 100.0% |
| 2jln | 10 | 95.0% | 94.5% | 3f3e | 24 (2) | 99.9% | 100.0% |
| 2zjs | 11 | 96.4% | 96.0% | 1yew | 39 (3) | 100.0% | 100.0% |
| 2jaf | 21 (3) | 96.4% | 96.1% | 2b2h | 33 (3) | 100.0% | 100.0% |
| 3eml | 7 | 98.4% | 98.7% | 2bl2 | 40 (10) | 100.0% | 100.0% |
| 3b8c | 10 | 99.0% | 98.8% | 2vpz | 16 (2) | 100.0% | 100.0% |
| 2z73 | 7 | 98.7% | 99.0% | 2yvx | 10 (2) | 100.0% | 100.0% |
The table lists the percentage of 5000 decoy structures with higher energy than that of the native state, as well as the number of helices (with multiplicity in parentheses). The ranking with the full-set energy matrix and the energy matrix with the ranked structure left out are given.