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. 2010 May 28;38(Web Server issue):W275–W280. doi: 10.1093/nar/gkq438

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© The Author(s) 2010. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 4. — Performance of TransFind. We defined 397 sets of genes which were annotated with top Gene Ontology terms and searched for enriched putative transcription factor targets using different parameters. Results for original data (dark grey) are compared to results for shuffled matrices or promoter sequences (medium grey) or to random gene sets of the same size distribution (light grey). Panel A shows the fraction of GO sets with at least one significant factor and panel B shows the average number of discovered factors in a GO set.