Table 1.

Parameter list of ZOOM Lite

Parameter option	Description
Organism	Determine whether the mapped reads are assembled as a diploid or not
Paired-end settings	Set the minimum and the maximum distance between the two read mates
Read quality	Whether or not to ignore low-quality bases when mapping
Mapping criteria	Set the number or ratio of mismatches or indels allowed between reads and the reference sequence Whether to achieve high sensitivity
Collecting results	Whether to include top N mapping results for each read Utilize quality score to rank mapping positions of each read before returning mapping results