Table 1.
Length of each alignment and number of positions whose alignments differ between each pair of methods
| Length | TrX + ClustalW | TrX + Muscle | TrX + Mafft | TrX + Tcoffee | ClustalW | Muscle | Mafft | Tcoffee | |
|---|---|---|---|---|---|---|---|---|---|
| TrX + ClustalW | 11 514 | 0 | 780 | 816 | 684 | 1580 | 1260 | 1491 | 2520 |
| TrX + Muscle | 11 553 | 819 | 0 | 501 | 633 | 1582 | 1246 | 1455 | 2543 |
| TrX + Mafft | 11 562 | 864 | 510 | 0 | 693 | 1545 | 1240 | 1448 | 2520 |
| TrX + Tcoffee | 11 526 | 696 | 606 | 657 | 0 | 1552 | 1201 | 1450 | 2505 |
| ClustalW | 11 562 | 1628 | 1591 | 1545 | 1588 | 0 | 1338 | 1380 | 2434 |
| Muscle | 11 604 | 1350 | 1297 | 1282 | 1279 | 1380 | 0 | 1342 | 2487 |
| Mafft | 11 679 | 1656 | 1581 | 1565 | 1603 | 1497 | 1417 | 0 | 2574 |
| Tcoffee | 13 771 | 4777 | 4761 | 4729 | 4750 | 4643 | 4654 | 4666 | 0 |
Trx, TranslatorX—the back-translation approach.