Skip to main content
. 2010 Jun 10;132(22):221104. doi: 10.1063/1.3451115

Figure 1.

Figure 1

(a) Schematic representation of the tube formed by spherical compartments. (b) Effective mobility and (c) diffusion coefficient of a point particle in such a tube found in Brownian dynamics simulations at ν=aR=0.3 (lR=21ν21.91) are shown by squares and circles, respectively, while triangles in panel (b) show function w(F), Eq. 7. Dashed lines represent asymptotic behaviors of the corresponding quantities. μeff and Deff were calculated by mapping motion of the particle onto the random walk among the openings and using the formulas for μeff and Deff derived in Ref. 13. The results were obtained by averaging over 2.5×104 transitions among the openings. If the trajectory crossed the compartment wall, the step was rejected. The dimensionless time step Δt˜=DΔtR2 was different at different values of the driving force: Δt˜=106 at βFR≤1, Δt˜=106(βFR) at βFR≥1. The error in our numerical results is smaller than the size of the symbols in the figure.