Table 1.

Functional associations of TNR-containing genes

TNR	Location	N	Effect	The representative GO-term	Fraction of genes	Fold enrich.	P-value	Bon ferroni
gtt	3′ UTR	31	No
att	3′ UTR	24	No
acc	His	26	transcription/nucleic acids binding/nucleus location	GO:0006355∼regulation of transcription. DNA-dependent	0.50	3.9	8.7E−06	4.5E−02
				GO:0005634∼nucleus	0.73	3.1	2.6E−08	2.3E−05
agg	5′ UTR	22	No
	Glu	79	transcription/nucleic acids binding/nucleus location	GO:0006355∼regulation of transcription. DNA-dependent	0.25	2.1	2.3E−03	ns
				GO:0005634∼nucleus	0.76	1.4	5.6E−06	4.8E−03
cct	Ser	20	No
gat	Asp	21	transcription/nucleic acids binding/nucleus locationa	GO:0006355∼regulation of transcription. DNA-dependent	0.19	2.5	ns	ns
				GO:0005634∼nucleus	0.13	1.8	ns	ns
cag	5′ UTR	20	No
	Gln	94	transcription/nucleic acids binding/nucleus location	GO:0006355∼regulation of transcription. DNA-dependent	0.48	3.8	2.3E−17	1.2E−13
				GO:0005634∼nucleus	0.66	2.5	1.9E−15	1.7E−12
	Ser	35	transcription/nucleic acids binding/nucleus location	GO:0006355∼regulation of transcription. DNA-dependent	0.44	3.6	4.7E−06	2.4E−02
				GO:0005634∼nucleus	0.53	2.2	3.0E−04	2.3E−01
ctg	Leu	69	membrane location	GO:0031224∼intrinsic to membrane	0.63	2.1	5.0E−08	4.3E−05
cgg	5′ UTR	134	protein ST kinase activity	GO:0004674∼protein serine/threonine kinase activity	0.11	4.8	2.3E−06	6.7E−03
	Gly	42	transcription/nucleic acids binding/nucleus location	GO:0006355∼regulation of transcription. DNA-dependent	0.44	3.2	6.0E−06	3.1E−02
				GO:0005634∼nucleus	0.61	2.2	8.4E−06	7.2E−03
	Ala	40	transcription/nucleic acids binding/nucleus location	GO:0006355∼regulation of transcription. DNA-dependent	0.28	2.5	6.1E−03	ns
				GO:0005634∼nucleus	0.43	1.9	3.3E−03	ns
ccg	5′ UTR	72	No
	Ala	37	transcription/nucleic acids binding/nucleus location	GO:0006355∼regulation of transcription. DNA-dependent	0.61	4.8	5.5E−12	2.9E−08
				GO:0005634∼nucleus	0.72	2.7	1.6E−08	1.4E−05
	Pro	21	transcription/nucleic acids binding/nucleus location	GO:0006355∼regulation of transcription. DNA-dependent	0.45	3.3	1.5E−03	ns
				GO:0005634∼nucleus	0.60	2.1	5.1E−03	ns

^anot significant.