TABLE II.
Percentage of autosomal SNP pairsa showing no evidence of recombination (D′ = 1), perfect LD (r2 = 1), or where useful LD is observed (r2≥0.8)
|
D′ = 1 |
r2 = 1 |
r2≥0.8 |
||||
|---|---|---|---|---|---|---|
| Inter-SNP distance (kb) | CROATIA | CEU | CROATIA | CEU | CROATIA | CEU |
| ≤10 | 62.85 | 60.79 | 3.86 | 3.54 | 7.61 | 6.08 |
| 10–20 | 43.76 | 41.04 | 1.57 | 1.38 | 4.02 | 3.01 |
| 20–50 | 29.57 | 26.87 | 0.66 | 0.55 | 1.95 | 1.42 |
| 50–100 | 19.01 | 16.46 | 0.20 | 0.16 | 0.69 | 0.50 |
| 100–200 | 13.27 | 10.96 | 0.05 | 0.04 | 0.20 | 0.15 |
| 200–500 | 10.10 | 7.91 | 0.01 | 0.01 | 0.04 | 0.03 |
| 500–1,000 | 8.95 | 6.85 | 0.00 | 0.00 | 0.00 | 0.00 |
| 1,000–2,000 | 8.42 | 6.59 | 0.00 | 0.00 | 0.00 | 0.00 |
| 2,000–5,000 | 7.92 | 6.53 | 0.00 | 0.00 | 0.00 | 0.00 |
| 5,000–10,000 | 7.53 | 6.53 | 0.00 | 0.00 | 0.00 | 0.00 |
a
Restricted to SNPs with minor allele frequency ≥0.05 and HWE P-value≥0.01 in both samples (n = 281,216).