Table 1.

The Effect of Sty-Specific SNP Failure on the Estimates of Average Heterozygosity $\widehat{\mathbf{H}}$ and Pairwise IBD Proportions $\widehat{\mathit{\pi }}$

Enzyme- Specific SNP Set	Average Heterozygosity $\widehat{\mathit{H}}$		Average Pairwise Proportion of IBD $\widehat{\mathit{\pi }}$
	Within the Problem Samples	Within Other Samples	Within the Problem Samples	Between the Problem and Other Samples	Within Other Samples
Sty	0.704 ± 0.002	0.317 ± 0.005	0.952 ± 0.004	0.320 ± 0.074	0.015 ± 0.013
Nsp/Sty	0.400 ± 0.003	0.319 ± 0.005	0.147 ± 0.005	0.102 ± 0.011	0.007 ± 0.008
Nsp	0.309 ± 0.003	0.321 ± 0.006	0.0 ± 0.0	0.0 ± 0.0	0.008 ± 0.011