Table 2.
Primers used in this study
| Name | Sequence 5′–3′ |
|---|---|
| MycF | AATTCGCGGCCGATATCTAGAACAAAAACTCATCTCAGAAGAG |
| MycR | CAGATCCTCTTCTGAGATGAGTTTTTGTTCTAGATATCGGCCGCG |
| LexAF | AGAAAGCTTCCGGTGTCATGTTCGCTCCT |
| LexAR | AGAGAATTCATGACCTTGCGGATCACCGTGAC |
| LexAmut1F | CGACTACATTCATTGCCATGAAGACAGCAACGACACCTCGGTTGC |
| LexAmut1R | GCAACCGAGGTGTCGTTGCTGTCGTTCATGGCAATGAATGTAGTCG |
| SigCupclone | GCTGCGGAGGAAGCTTGTAAATGCCGCGGTG |
| SigCdownclone | ATCCGCCGGTGAGGTCGTCGGGCTCCGCGTC |
| RSigC | TCTCTAGAGCGGGCATAAACCATAGCCCGGCAGG |
| SigCmut2F | CGCTCCGGCCGGCAAGGTTGCGATGCCGGACGGGCCCCGC |
| SigCmut2R | GCGGGGCCCGTCCGGCATCGCAACCTTGCCGGCCGGAGCG |
| SigCmut3F | GCCGTAGTATCACACGCGCGAGATGGCAGGCGCCAAAGCG |
| SigCmut3R | CGCTTTGGCGCCTGCCATCTCGCGCGTGTGATACTACGGC |
| SigCmut4F | GTATCACACGCGCGCAGATGCAGGCGCCAAAGCGCATTCG |
| SigCmut4R | CGAATGCGCTTTGGCGCCTGCATCTGCGCGCGTGTGATAC |
| SigCmut5F | GGCTATGGTTTATGCCCATGCCGCGACGGCAAGCGACGAC |
| SigCmut5R | GTCGTCGCTTGCCGTCGCGGCATGGGCATAAACCATAGCC |
| SigCmut6F | GGCTATGGTTTATGCCATGACCGCGACGGC |
| SigCmut6R | GCCGTCGCGGTCATGGCATAAACCATAGCC |
| Rv1955 GSP1 | ATCGCAACTCCAGAATGTC |
| Rv1955 GSP2 | AATACCGGCCGGCCATCCACAG |
| Rv1955 GSP3 | TGGATCAGGGGGCGGCACAG |
| Rv1955mycF | GTACAGCTGCGCACCGACCCGACCCAGA |
| Rv1955mycR | AGCTCTAGACCGATCGGTGGGGTGTCGCC |
| mycFS1F | CGCGGCTGAGCTTGTGCCGTGGGATGGGTGTCGCACCGTC |
| mycFS1R | GACGGTGCGACACCCATCCCACGGCACAAGCTCAGCCGCG |
| mycFS2F | GACAAGACCAACTGTGCCGCCCCTGATCCAGCCGCCATGG |
| mycFS2R | CCATGGCGGCTGGATCAGGGGCGGCACAGTTGGTCTTGTC |
| mycFS3F | GATCCAGCCGCCATGGGTACTGGAAGTTCTTCCGGGCATC |
| mycFS3R | GATGCCCGGAAGAACTTCCAGTACCCATGGCGGCTGGATC |
| mycORF1F | GGTTGGCGGTGGCAACGAGGGAACAAAAACTCATCTCAG |
| mycORF1R | CTGAGATGAGTTTTTGTTCCCTCGTTGCCACCGCCAACC |
| mycORF2F | GAACAAGAGCGGCCGCGGCGAACAAAAACTCATCTCAG |
| mycORF2R | CTGAGATGAGTTTTTGTTCGCCGCGGCCGCTCTTGTTC |
| MycRTR | CCTCTTCTGAGATGAGTTTTTG |
| SigCRTF | TCGAGGTAACCACGATGATC |
| LexARTF | CCACCGTCAAGACGTTCAAA |
| Rv1955RTF | AGTTCTTCCGGGCATCTGT |
| JORTF | TTGCGCATGCCGTAGTATCA |
| ORF2F | TGCCGGTGCTGGTGGTCATC |
| ORF2-Rv1955R | GTCGCCGAAGGCTCTTTTCCAG |
| ORF2-Rv1956R | TGGGGTCGCTGGGTTCCTTCT |
| ORF2-Rv1957R | GGCGGCGTATGCCGTAAGTTCT |