TABLE 1.
Primer | Oligonucleotide sequencea | Annealing temp (°C)b |
---|---|---|
LppT-NdeI-N | AACATATGAAAAAACCTAATTTTAAAACAT | 54 |
LppT-NotI-C | TCGCGGCCGCTCTTAGCAATTGCTTGTCTTGC | 57 |
LppT-mut1L | GATTTTTGGTTTGAGCAAAGAGA | 54 |
LppT-mut1R | CTCAAACCAAAAATCAAATTTTTG | 51 |
LppT-mut2L | TTCCAATGGGAAGCTGACCAA | 56 |
LppT-mut2R | AGCTTCCCATTGGAATTTATTG | 53 |
RGD-mutL | GCCCGTGGTGAAGTTTAC | 51 |
RGD-mutR | GTAAACTTCACCACGGGC | 51 |
RGD-reverse | TTTTGTAAACGGCATCAACTACGACATC | 60 |
RGD-forward | GTTGATGCCGTTTACAAAACTGTAGTAG | 59 |
Underlined nucleotides represent restriction enzyme sites, and nucleotides presented in boldface indicate site-specific mutations.
Obtained with the Oligonucleotide Properties Calculator (http://www.basic.northwestern.edu/biotools/oligocalc.html), using the nearest neighbor method and the parameters 300 nM primer and 50 mM salt (Na+), not considering nucleotides added to create the restriction enzyme recognition sites.