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. 2010 May 21;192(14):3773–3779. doi: 10.1128/JB.00253-10

TABLE 1.

Oligonucleotide primers used

Primer Oligonucleotide sequencea Annealing temp (°C)b
LppT-NdeI-N AACATATGAAAAAACCTAATTTTAAAACAT 54
LppT-NotI-C TCGCGGCCGCTCTTAGCAATTGCTTGTCTTGC 57
LppT-mut1L GATTTTTGGTTTGAGCAAAGAGA 54
LppT-mut1R CTCAAACCAAAAATCAAATTTTTG 51
LppT-mut2L TTCCAATGGGAAGCTGACCAA 56
LppT-mut2R AGCTTCCCATTGGAATTTATTG 53
RGD-mutL GCCCGTGGTGAAGTTTAC 51
RGD-mutR GTAAACTTCACCACGGGC 51
RGD-reverse TTTTGTAAACGGCATCAACTACGACATC 60
RGD-forward GTTGATGCCGTTTACAAAACTGTAGTAG 59
a

Underlined nucleotides represent restriction enzyme sites, and nucleotides presented in boldface indicate site-specific mutations.

b

Obtained with the Oligonucleotide Properties Calculator (http://www.basic.northwestern.edu/biotools/oligocalc.html), using the nearest neighbor method and the parameters 300 nM primer and 50 mM salt (Na+), not considering nucleotides added to create the restriction enzyme recognition sites.