TABLE 4.
JCVI role categorya | No. of annotated genes | No. of σB-dependent genesb | Fisher's exact test P valuec | Odds ratiod |
---|---|---|---|---|
Cellular processes | 165 | 35 | 0.0463 | 1.5 |
Energy metabolism | 380 | 103 | <0.0001 | 2.3 |
DNA metabolism | 102 | 8 | 0.0263 | 0.5 |
Regulatory functions | 226 | 24 | 0.0361 | 0.6 |
Unknown function | 109 | 9 | 0.0312 | 0.5 |
JCVI L. monocytogenes EGD-e role categories.
Number of σB-dependent genes in all lineage representatives for each role category.
Fisher's exact test was used to identify significant associations between σB-dependent genes and the total number of genes in a role category; two-sided P values of <0.05 were considered significant.
Odds ratios were calculated to characterize significant associations between σB-dependent genes and role category.