TABLE 5.
Genea | Productb | Fold changec |
Adjusted P valued |
||
---|---|---|---|---|---|
Lineage I | Lineage II | Lineage I | Lineage II | ||
lmo0130 | Ser/Thr protein phosphatase family protein | 2.1 | 1.3 | 0.0046 | 0.0764 |
lmo0188 | Dimethyladenosine transferase (16S rRNA dimethylase) | 1.7 | 1.1 | 0.0348 | 0.3556 |
lmo0217 | Similar to B. subtilis DivIC protein | 1.8 | 1.2 | 0.0167 | 0.0230 |
lmo0239 | Hypothetical protein | 1.9 | 1.1 | 0.0244 | 0.4018 |
lmo0315 | Similar to thiamine biosynthesis protein | 2.5 | 1.0 | 0.0395 | 0.9741 |
lmo0640 | Similar to oxidoreductase | 1.8 | 1.2 | 0.0081 | 0.0748 |
lmo0958 | Transcriptional regulator, GntR family | 1.7 | 1.4 | 0.0082 | 0.0100 |
lmo0959 | Llm protein | 1.8 | 1.1 | 0.0398 | 0.3736 |
lmo1076 | N-Acetylmuramoyl-l-alanine amidase, family 4 | 1.6 | 1.2 | 0.0264 | 0.2002 |
lmo1237 | Similar to glutamate racemase | 1.7 | 1.0 | 0.0324 | 0.8658 |
lmo1255 | PTS, trehalose-specific, IIBC component | 2.7 | 1.3 | 0.0227 | 0.0495 |
lmo1293 | Similar to glycerol-3-phosphate dehydrogenase | 1.8 | 0.5 | 0.0200 | 0.0026 |
lmo1348 | Similar to aminomethyltransferase | 1.7 | 0.9 | 0.0447 | 0.1346 |
lmo1357 | Acetyl-coenzyme A carboxylase, biotin carboxylase | 1.9 | 1.3 | 0.0290 | 0.0092 |
lmo1389 | Similar to sugar ABC transporter, ATP-binding protein | 2.2 | 1.2 | 0.0020 | 0.0868 |
lmo1390 | Similar to ABC transporter (permease proteins) | 2.2 | 1.2 | 0.0041 | 0.0399 |
lmo1391 | Putative ABC transporter, permease protein | 1.8 | 1.2 | 0.0187 | 0.2869 |
lmo1538 | Similar to glycerol kinase | 2.9 | 0.7 | 0.0001 | 0.0195 |
lmo1539 | Similar to glycerol uptake facilitator | 3.9 | 0.7 | 0.0000 | 0.0746 |
lmo1542 | Ribosomal protein L21 | 1.5 | 1.4 | 0.0354 | 0.0355 |
lmo1570 | Highly similar to pyruvate kinases | 1.8 | 1.1 | 0.0227 | 0.7807 |
lmo1658 | 30S ribosomal protein S2 | 2.2 | 1.3 | 0.0029 | 0.0530 |
lmo1849 | Similar to metal cation ABC transporter, ATP-binding protein | 2.3 | 1.0 | 0.0224 | 0.8362 |
lmo1956 | Similar to transcriptional regulator (Fur family) | 2.0 | 1.0 | 0.0148 | 0.9788 |
lmo1998 | Similar to opine catabolism protein | 5.3 | 0.7 | 0.0467 | 0.0471 |
lmo2000 | PTS, mannose/fructose/sorbose family, IID component | 13.5 | 0.9 | 0.0019 | 0.7744 |
lmo2001 | PTS, IIC component | 10.4 | 0.7 | 0.0089 | 0.0102 |
lmo2004 | Transcriptional regulator, GntR family | 3.8 | 0.9 | 0.0379 | 0.4411 |
lmo2020 | Similar to cell division initiation protein (septum placement) | 2.5 | 1.4 | 0.0096 | 0.0014 |
lmo2038 | UDP-N-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate ligase | 2.9 | 1.2 | 0.0124 | 0.0404 |
lmo2058 | Similar to heme O oxygenase | 2.1 | 1.2 | 0.0462 | 0.1411 |
lmo2101 | Pyridoxine biosynthesis protein | 2.4 | 1.1 | 0.0011 | 0.5643 |
lmo2102 | Unknown | 1.9 | 1.2 | 0.0066 | 0.0845 |
lmo2118 | Similar to phosphoglucomutase | 1.5 | 0.9 | 0.0367 | 0.6917 |
lmo2167 | Metallo-beta-lactamase family protein | 2.0 | 1.2 | 0.0201 | 0.1227 |
lmo2208 | Hydrolase, haloacid dehalogenase-like family | 2.0 | 1.0 | 0.0153 | 0.9761 |
lmo2216 | Similar to histidine triad (HIT) protein | 1.7 | 1.3 | 0.0444 | 0.0018 |
lmo2217 | Similar to unknown protein | 1.5 | 1.4 | 0.0329 | 0.0010 |
lmo2223 | Conserved hypothetical protein | 2.0 | 1.4 | 0.0136 | 0.0056 |
lmo2232 | CBS domain protein | 2.5 | 1.2 | 0.0123 | 0.1146 |
lmo2240 | Similar to ABC transporter (ATP-binding protein) | 1.7 | 1.1 | 0.0137 | 0.4621 |
lmo2397 | Similar to NifU protein | 1.8 | 1.2 | 0.0244 | 0.3112 |
lmo2415 | Similar to ABC transporter, ATP-binding protein | 2.0 | 1.0 | 0.0254 | 0.8350 |
lmo2507 | Highly similar to the cell division ATP-binding protein FtsE | 2.7 | 1.3 | 0.0290 | 0.0181 |
lmo2547 | Highly similar to homoserine dehydrogenase | 1.5 | 0.9 | 0.0341 | 0.6523 |
lmo2633 | Ribosomal protein S10 | 1.6 | 1.0 | 0.0187 | 0.8983 |
lmo2660 | Similar to transketolase | 1.7 | 0.9 | 0.0305 | 0.1802 |
lmo2664 | Similar to sorbitol dehydrogenase | 2.2 | 1.1 | 0.0027 | 0.7538 |
lmo2665 | Similar to PTS galactitol-specific enzyme IIC component | 2.9 | 1.0 | 0.0064 | 0.9200 |
lmo2666 | Similar to PTS galactitol-specific enzyme IIB component | 2.9 | 0.7 | 0.0004 | 0.0005 |
lmo2667 | Similar to PTS galactitol-specific enzyme IIA component | 2.3 | 0.8 | 0.0015 | 0.0316 |
lmo2668 | Similar to transcriptional antiterminator (BglG family) | 2.2 | 0.7 | 0.0014 | 0.0058 |
lmo2758 | Similar to inosine monophosphate dehydrogenase | 1.7 | 1.1 | 0.0239 | 0.5999 |
lmo2791 | Partition protein, ParA homolog | 1.9 | 1.0 | 0.0260 | 0.7694 |
lmoh7858_0080.5 | Hypothetical protein | 3.2 | 1.0 | 0.0002 | 0.9174 |
Gene names are based on the L. monocytogenes EGDe locus. Bold type indicates putative operons.
Common names of the products are based on the EGDe annotation.
Changes in the transcript level in the parent strain compared to the transcript level in the ΔsigB strain. A ≥1.5-fold change was considered significant.
An adjusted P value of <0.05 was considered significant.